Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2090 ATGACCGTACGAGCTCCTTCCAGCGTGACCCGCATGCAAGCCCTCTACAACTTCCACGTGCACAACCCGACATCCTCCCGCCACTCTCACGCGCGTCGTGGGTACGATGTCTATCTCTCTCTGTTTTTCCAGCTGCTTCTTACAGCAGTCTGCAAGCTTGGTTTGCAGGTGGGCACATTGACATTTGGACCCTCTGAGACTTTGGATTTGGATGATTTGATCTGTAGCTTAGAAATGCCTCATGGCACTGTGAAAAATGGAAATGAGAAGGAAGTATTGGTTTCTGCCAAGGCATCAGAGGCTTCTTCTGTTATTAGTCATCCTGTAGCTTCACAACCAAACCCAAATACCATTGATACAAACGATGGGGTGTCAAAAATTACCAACAATGAGGCAGCTAATGTATCGCATGAAAGATCAATATCAATTCCAGGAAATCAAGATGCAGAAATTCAAGGATCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTAAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCCTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGAGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCACTTGGTAAGGAGACAGGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAACAAATGTAGATTAGTGCAGCCACAGGAACAACCATTAGTGGATCCTGCTGGAGTAAGTCTCTCCACACGAATGGCAAAACTTTCAGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAATTGCCAAACCTCTGCAAATCTATTTTGATAATGGGGATGAAAATTCAGCTTTGAAATGGGTAGAGCGCTGGTCAAATTCTAGATTCTGGAAACCAATTCCCCAAGTAAAAAAAGCTCCAGAGTCTAAATCTCAAAGAAAGCTGAGCACTGGTCAAACTGGAGAGGCACATACAGTCAGATCGAAACGCACAAGGAGAGTTCCCAGTGTAAACAATGACAGTGCTACTGTCCAATCATCTGCAGAAGTTGAGAAACCCAAACGTACTTTTAGGAAAGTTTCAAGTCACTCAGCAGCAGAGCAGGTTCAGGAGAATCCTCAGATGGAGCTCGAAAAGGTCAAGCGCAGTCTGAGAAAGGTCCATAACCCTGTCCTTGATAATTCTGCCCCAACAGAAGCAGATGCGGAGAAGCCCAAGGAAAGCTTGGACAAGGTTTCTAATGGTCTAGGCCGTGACGTTTTGGCAAGAGGTGCTAGTAATTCGTCTGAGAAGATGAAAAAAGACGCAATCTCAATGATACCTGTCCAGCTTGATTTGGAAACAACTCCTGAGCCGGTACCGATAAAAGAGGTGCTTAATGTACTTAATGGTGATCCAGTTGTAGATTCACAGCCTTTGATTGAGAACAGTGACAGAGATAAAAATATTGCTGGTGATGAGCCTGTTGAGACTAAGCCTCTGACAGAGAGCTACGCTAAAGACGATATCAGCCTATTAACAAATGGGGAATCAAACCACAAGGAAGATTATACTATCAACGAGAATCCAAAATCTGGGAGAAAAGCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGTTGCAACACAGTCCAACCATACCTAGCTACATGGCAGCAACTGAATCTGCAAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGAGATTGAAAGAAATAACCTCAACCGACGACATTCTTTACCGTCGCCCACTAATGCTAAAATTAGCTCGCAGTCTCCACGAACACAAAGACTTTCTTCCGATTTTCATATCAATGGCGGATCGATCTCTTCACGCCGCGACCTTCCGGACCCAAGCAAATGCGCTGCTCAGGAAAAATTTTACGTACCAGGTCTTCTTCTTCCCTCTCTTTACACGTTCTGTAAACGAAATTTGAAGACAAATATTCGTCTGATTTCCTTCCCATTCATCCTCTGTTTATTGCTTGTTCTACTTCAAAGAATAGTCAACAACGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATACGAATGGAGATGGTGTATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACTTTGATACAAGCAGCAAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCCATATTGCAAATGCCTTCTCCTGATTTCCGTGCCGTGAGAACAGATTTTTTTCCATATACGGACTTGCCAAATGAATCGTGCAGGAAGTCAATGTCGTGTCCTGTAACTATGCTTTTCACTGGAAATAATCGCTCTCTCGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTCTTTGACTTGGAAATCTTCTGATGTTCTGTATGGCGTCTCTCATAACGTTTTGGGATCAGAATCGAGGCCTAGAACCAACAATTTTCTTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATTATATGCAACGTCAGTGTGCAGCAGGGTCGACATTGACAATTCCTGTTTCTATATTCTCTCTTACAAAGACAGAAGATATTATATGTGCTCAAGGTCTACAATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAAAGGTTACCAAAATGGGAACTCGGAGGGGAAAATCAATGAGATTCTTTCAGGTTTTGATTTCTTAAATTCGGATGGGAACAATTTTAACGTGACTATATGGTATAATTCATCTTATAAGAGTGATATCGGCCGTTCTTCTAACGTTTTGTTGCGGGTTCCACGCCTTGTTAATCTGGTATCCAATGGCTACCTTAAGTTTTTGTTAGGAGCAGGCACAGAGATGCTCTTCGAGTTTGTCAAAGAAATGCCTAAACCAGCAACAAAGATCAGACTGGATTTCTCTTCTCTACTTGGTGCACTTTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCTGTTATCTTGTCATCGTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCATACGCTTATTTTCTCACAATTTCTGCAGTATACATGTTTTGTTTTGTGATGTTTGGTTCAGTTATAGGGCTAAAATTTTTTACACTGAATGACTACAGTATTCAATTTGTGTTTTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGTTGCTGCCATGTTTTCGAATGTCAAGACTGCTGAAGTTTCGTCATATATATGCATCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAATTTTTTGTCGAAGATTCGTCATTCCCACGTGGCTGGATCATGGTCATGGAGTTATATCCTGGATTTTTGCTATATCGTGGGTTGTATGAGTTTGGATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACTGATAGCGTTAACGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTGGTTGCATATTGTATCGATCAAGTTTTGTCATCGGGAAGTTGGAAGCATCCATTTTTTTTCCTCCAAAGACATGACACAAAACCTCCTTCTCAGAATCCTGGTTTGGAAAGACAAGGATCAAAAGTTTTGGGTCAGATTGATAAACCTGATGTTAGAGAAGAGAGGGAGAAGGTTGAACGGTTGCTGAAGGAAGGAGATCCAAGTCATGTCGTCTGCGACCATCTCAAAAAGGTGTATCCAGGAAAGGATGGAAACCCTGAGAAGTTTGCAGTTAGAGGACTATCTCTTGCTTTGCATCGAGGAGAATGCTTTGGGATGCTAGGTCCTAATGGTGCGGGAAAGACCTCCTTTATCAGTATGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTTGTTGAAGGTCTGGACATAAGGACTGAGATGAATAGCATATATGCAAGAATGGGTGTTTGTCCACAGCATGAGTAA 4038 42.74 MTVRAPSSVTRMQALYNFHVHNPTSSRHSHARRGYDVYLSLFFQLLLTAVCKLGLQVGTLTFGPSETLDLDDLICSLEMPHGTVKNGNEKEVLVSAKASEASSVISHPVASQPNPNTIDTNDGVSKITNNEAANVSHERSISIPGNQDAEIQGSTCQDAPSDPERIRKEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQNKCRLVQPQEQPLVDPAGVSLSTRMAKLSANAFTIKLASSTIAKPLQIYFDNGDENSALKWVERWSNSRFWKPIPQVKKAPESKSQRKLSTGQTGEAHTVRSKRTRRVPSVNNDSATVQSSAEVEKPKRTFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLDNSAPTEADAEKPKESLDKVSNGLGRDVLARGASNSSEKMKKDAISMIPVQLDLETTPEPVPIKEVLNVLNGDPVVDSQPLIENSDRDKNIAGDEPVETKPLTESYAKDDISLLTNGESNHKEDYTINENPKSGRKASTPAKQERVENGLQHSPTIPSYMAATESAKAKLRAQGSPRFGQEIERNNLNRRHSLPSPTNAKISSQSPRTQRLSSDFHINGGSISSRRDLPDPSKCAAQEKFYVPGLLLPSLYTFCKRNLKTNIRLISFPFILCLLLVLLQRIVNNELDKPKNNCGCVCVDTNGDGVCEKVCGLEYSTLIQAASCPIPSPPQWPPILQMPSPDFRAVRTDFFPYTDLPNESCRKSMSCPVTMLFTGNNRSLGNILAASMVPSSLTWKSSDVLYGVSHNVLGSESRPRTNNFLDPAFFSNLPLYYMQRQCAAGSTLTIPVSIFSLTKTEDIICAQGLQLWRNSSSEVNDEIYKGYQNGNSEGKINEILSGFDFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLVSNGYLKFLLGAGTEMLFEFVKEMPKPATKIRLDFSSLLGALFFTWVILQLFPVILSSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLTISAVYMFCFVMFGSVIGLKFFTLNDYSIQFVFYLLFINLQVSLAFLVAAMFSNVKTAEVSSYICIFGTGLLGGFLFQFFVEDSSFPRGWIMVMELYPGFLLYRGLYEFGFYSFTGNLMGTYGMRWGDLTDSVNGMREVLIIMLVEWIVVLLVAYCIDQVLSSGSWKHPFFFLQRHDTKPPSQNPGLERQGSKVLGQIDKPDVREEREKVERLLKEGDPSHVVCDHLKKVYPGKDGNPEKFAVRGLSLALHRGECFGMLGPNGAGKTSFISMMIGLIKPTAGTAFVEGLDIRTEMNSIYARMGVCPQHE 1345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71381969 71396657 + Tan0017617.1 Tan05g2090 753398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2090 1345 Pfam ABC transporter 1280 1344 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g2090 1345 Pfam IQ calmodulin-binding motif 170 189 IPR000048 GO:0005515(InterPro)
Tan05g2090 1345 Pfam IQ calmodulin-binding motif 192 209 IPR000048 GO:0005515(InterPro)
Tan05g2090 1345 MobiDBLite consensus disorder prediction 104 125 - -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 351 366 - -
Tan05g2090 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1344 IPR027417 -
Tan05g2090 1345 Pfam Protein of unknown function (DUF4005) 543 616 IPR025064 -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 482 638 - -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 490 513 - -
Tan05g2090 1345 Pfam ABC-2 family transporter protein 885 1191 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Tan05g2090 1345 Gene3D - 1253 1345 IPR027417 -
Tan05g2090 1345 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 673 1344 IPR026082 GO:0005319(PANTHER)|GO:0006869(PANTHER)|GO:0016020(InterPro)|GO:0042626(PANTHER)|GO:0043231(PANTHER)|GO:0055085(InterPro)|GO:0140359(InterPro)
Tan05g2090 1345 MobiDBLite consensus disorder prediction 552 568 - -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 415 429 - -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 404 431 - -
Tan05g2090 1345 SMART iq_5 190 211 IPR000048 GO:0005515(InterPro)
Tan05g2090 1345 SMART iq_5 167 189 IPR000048 GO:0005515(InterPro)
Tan05g2090 1345 ProSiteProfiles IQ motif profile. 192 214 - -
Tan05g2090 1345 ProSiteProfiles IQ motif profile. 168 196 - -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 597 628 - -
Tan05g2090 1345 MobiDBLite consensus disorder prediction 318 391 - -
Tan05g2090 1345 Gene3D - 166 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2090 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2090 Tan-Chr5:71381969 Tan09g2142 Tan-Chr9:71652058 1.20E-279 dispersed
Tan05g2090 Tan-Chr5:71381969 Tan09g2141 Tan-Chr9:71652058 1.20E-279 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75