Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2117 ATGCCGCCGAGACGATATGCTGTTGGACGGGCCGATGAGGCCACCCACCCTGACTCCATTAGAGCCACCTTGGCCGAGTTTGTTTCCACTTTCATCTTCGTCTTTGCTGGCGAAGGCTCCGTCCTCGCTCTCGATAAAATTTTCAGGCCTGCGGATTATGGAAGTTATGGTCGTGGAGGTTACGGTCACGGTTACAGTCGAAAGGGGGGCGACACGGGCCGAGGGGCATCGGATTTAGTAGTAATAGCGATAGCGCATGCATTTGCGCTGTTCTCGGCGGTAGCGGCGAGTATCAACGTCTCCGGTGGGCATGTGAATCCTGCTGTAACATTTGGTGCTCTTCTTGGAGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATTTTGGGGGCCATTATCGCTTCACTTCTCTTGAGACTGGCGACTGGTGGCATGAGGCCTATGGGATTCTTCGTTTCATCAGGGATATCAGAACTGCACGGCTTTCTACTAGAGATAGTGCTTACATTCGCTTTGGTGTACACAGTTTACGCAACAGCAATAGATCCAAAGAGGGGCAGTTTGGGAACAATAGCCCCACTGGCAATCGGGTTAATAGTCGGGGCAAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCGGCCCGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATCGGCCCATTACTGGGAGGTGGCCTTGCTGCGCTTGTGTATGAGTATCTGGTCATTCCAGTGGAACCTCCTTTGCACACTCACCAGCCTTTAGCCCCTGAAGATTACTAA 834 52.88 MPPRRYAVGRADEATHPDSIRATLAEFVSTFIFVFAGEGSVLALDKIFRPADYGSYGRGGYGHGYSRKGGDTGRGASDLVVIAIAHAFALFSAVAASINVSGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIIASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71839586 71842148 - Tan0021815.1 Tan05g2117 753425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2117 277 CDD MIP 21 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 PANTHER AQUAPORIN-8 5 267 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Tan05g2117 277 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 SUPERFAMILY Aquaporin-like 13 268 IPR023271 -
Tan05g2117 277 FunFam Probable aquaporin TIP1-1 4 273 - -
Tan05g2117 277 Gene3D Glycerol uptake facilitator protein. 5 263 IPR023271 -
Tan05g2117 277 NCBIfam MIP family channel protein 25 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 Pfam Major intrinsic protein 14 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g2117 277 ProSitePatterns MIP family signature. 104 112 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2117 Tan-Chr5:71839586 Tan08g1843 Tan-Chr8:70567235 3.60E-74 dispersed
Tan05g2117 Tan-Chr5:71839586 Tan03g1125 Tan-Chr3:67392328 4.00E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2117 K09873 - csv:101208863 495.352