Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2119 ATGTCTGCAGTGGAAGAGAAGCTAGACGAAATCGAACCTTCAACAAGGAATAATGATGAGTTGGTGGAAGACGATGAAGGAGAGGAGGACCTTTCATGGTCATCAGACTCTGAGATTGGAGATGCATTGGACTGGTTGGATGCAAAGGAAGATGCTGAAACACTAGATGAGGCTTTTTCACTCAATGCTAGGCGTCCTAATGCTCATGGTGGGCTTTATTCTCGTCATAATTCCTCAACTCTTCAACCTCTCTCAAATCGGAACCAAAAGTTTACCAATCACATTCGAGCTTCACCTCTTGCGGAATGGGAAGGGAGGTTTAATGTAGGGATGTCAAACTCTGTTACCACTGCTATTCGTGACAGTGTCAAGGAAATGGCTATAGGAAAAACGAAAACTACAGAGAAAGCTGATCGTGCAACTGTTGAGCAGGCAATAGATCCTAGAACTCGGATGGTTTTATTCAAGATGCTCAATCGAGGTGTTTTTCATGACATTAATGGATGCATTTCTACTGGGAAAGAAGCTAATGTCTATCATGCAACAAAATCTGATGGTCAAGAATTTGCTGTCAAAGTCTACAAAACTTCAGTTTTGGTATTTAAGGATAGGGATCGCTATGTCCAAGGTGACTACCGTTTCAGACACGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCTGAGAAGGAAATGAGGAATTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGACTCCTCTCCTCTTGAGACTGCATGTGCTGGTCATGGAGTTCATTGGTAAGACAGGTTGGGCTGCACCTCGTCTTAAGGATGCTGCCTTGTCGTTGAACAGGCTACGTGAAAGTTATTTAGAGATAATTATTACAATGCGGACCCTCTACCAGAAGTGCAAGTTAGTGCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAAGCTGTTGATCTCGACCACCCTCATGCCCTTGATTTCCTTCGAGAAGATTGTCTTCATGTTTCAGATTTCTTTAAAAAACATGGGGTAGCTGTAATGACCATACGAGAACTGTTTGATTTTATAGTTGATCCATGCCTCACTGATGAGACGATTGATAATTATCTGGAAGAGATGCAAGAAAAAATTTCAGCAAGAGGCGATATATCTGTGGAGGATGAGATTGCAGATTCAGTATTTGTGCAGTCATATATTCCAAAGACACTGGATAGTGTCAAACATGTTGAGGAGGATGTAATACGTTTAACAAGTGGTCAAGACACTGAAGATATGTACTACAAGACAATAACAGGGTTAAAACAGGCCCTTCCAAGCGTTCAACTTGCATCAGAGATAAAAGATGAGGAAGAACACAACGCAGACTCGATCGAACAATCCAAAAATTTAACCGTTTTTTCAAATCCTGGCGAGAAAGAGACCGAATCGACATCAGAGGAAGATGAAGAGAGCTCGAATGAGTCAGAAGGAGGACCGAATTCTTCAACCGAGACGATGCAGACACCAATTGACAGGAAAGCTGCCAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAAAGAGAGGCCCGCAAAAACAAGGTTCCAAAGGCTGTAAAGAAACGAAAGAAAAAGTTGGCCAAGTCCCACAAGTAA 1674 41.7 MSAVEEKLDEIEPSTRNNDELVEDDEGEEDLSWSSDSEIGDALDWLDAKEDAETLDEAFSLNARRPNAHGGLYSRHNSSTLQPLSNRNQKFTNHIRASPLAEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAVKVYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRLHVLVMEFIGKTGWAAPRLKDAALSLNRLRESYLEIIITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQAVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDETIDNYLEEMQEKISARGDISVEDEIADSVFVQSYIPKTLDSVKHVEEDVIRLTSGQDTEDMYYKTITGLKQALPSVQLASEIKDEEEHNADSIEQSKNLTVFSNPGEKETESTSEEDEESSNESEGGPNSSTETMQTPIDRKAARKENKKKVKEEKREARKNKVPKAVKKRKKKLAKSHK 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71888907 71898537 + Tan0020658.2 Tan05g2119 753427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2119 557 SMART rio_2 135 371 IPR000687 GO:0004674(InterPro)|GO:0005524(InterPro)
Tan05g2119 557 FunFam Serine/threonine-protein kinase RIO1 271 412 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 471 485 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 540 557 - -
Tan05g2119 557 CDD RIO1_euk 166 355 - -
Tan05g2119 557 Pfam RIO1 family 177 364 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 461 557 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 1 37 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 1 20 - -
Tan05g2119 557 SUPERFAMILY Protein kinase-like (PK-like) 166 351 IPR011009 -
Tan05g2119 557 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 304 315 IPR018935 GO:0004674(InterPro)|GO:0005524(InterPro)
Tan05g2119 557 MobiDBLite consensus disorder prediction 21 35 - -
Tan05g2119 557 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 14 557 IPR051272 GO:0004674(PANTHER)
Tan05g2119 557 Coils Coil 519 540 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 501 515 - -
Tan05g2119 557 Gene3D Transferase(Phosphotransferase) domain 1 271 412 - -
Tan05g2119 557 PIRSF STPK_RIO1 2 557 IPR017407 GO:0004674(InterPro)
Tan05g2119 557 FunFam Serine/threonine-protein kinase RIO1 163 265 - -
Tan05g2119 557 Gene3D Phosphorylase Kinase; domain 1 163 265 - -
Tan05g2119 557 MobiDBLite consensus disorder prediction 516 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2119 K07178 - - csv:101208620 936.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2119 Tan-Chr5:71888907 Tan10g1197 Tan-Chr10:12033885 2.50E-276 dispersed
Tan05g2118 Tan-Chr5:71888907 Tan05g2119 Tan-Chr5:71888907 1.10E-303 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34