Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2135 ATGGTGCGCTTCGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCTGTTTCAGATGCTGTTGCTACATATTACTTGTACATGACGTATGTTCATCCTTTCATTTTTTCTCTAGCTACTATCATTCCAATGTCGCCAGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTGTTAATGGTTCAGGCTTACGAGGCTAATGTCGTGTGTCCAAACAAACATCAATCAGATCCAGAGAAGTTCTATAATAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGGCTTGATTCATCTGCTTATGATCAATTGATAAACGATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTGGAATTGGTGTCAAACTACAGTGATGTGAAGAATGCTATTATGGAAAAGCTTGTTAGATTGCGGGATGAGCCTGTGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCCAACATTATTTTAACAAATAGGCTTCAGCCATCATCAATAGTTACAGATGAGCTTTGTACTGCTTGTGATTTCAATCGTCCTGGAAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTGTTCATGGCTAAAAAATGCGACTATTATCATCTAAAGAGGCAAATTGAGTCTGAGTTTGTCGATAGTGGTAACGTTCGGTTGTCAAAACCATTTCTTGAGCTTCCGAAGTTGGAGCAACAAGCAAAACTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGTTTTTCGAGAAGTAGGGATCTGCATGAGAGAAAACTCCTTCTATATCGACACTGTTCGTAGTTTTCGAGACAGAAGGTATGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAACTATCAGAAGCAAAAGCGAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTATATGATTCATTACAGCTTGCTCATAAATGTATCCTCAACTCTTTTTATGGATATGTGATGCGGAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGAGAAAATCATTCAGAATGCTCGTCTGCTGATTGAGAAAATTGGAAAACCACTAGAGTTAGACACGGATGGTATTTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACCTTTAAAACAAAAGATTCGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAACACAAATGACCAATACCAGACACTTGTAGATCCTGTGAGGAAACTATATGAAACACGTAGTGAATGCTCAATTGAATTCGAAGTGGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTAAAAGGCTTTGAAATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACTTTAGAGGAATGCTATTCAGCTGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAGTGAAGGAAAAGATATTGCAGATAGTGAGTTACTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGTAGACTATGGGGAGCAAAAATCTTGTGCTGTTACCACTGCAAGACGCCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCCGTAAGTGAGCGAGCTATTCCTGTTGCTATATTTGAGACTGATCCAGAGATAATAAAATTTTATGTACGCAAATGGTGCAAGATTTCATCAGAAGTTGGCATTCGATCCATCATTGATTGGTCCTACTACAAACAGCGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCCAGGGTGGTCCATCCTGATTGGTTACATAAAAAAGTTCGTGAGAAGAACGATAAATTTCACCAGCAGAAAATAGTTGATGTGTTTGCGTCCTCAAGCAGAGGTAAATATTCAGAAAACAATGGTGGTGCAAGCAGCAGCAAACATGTGATGAATGGAAAAAATTCGGAGGATTTAGAAGACTTCCAAAAGAAAAAAAGTTCTACTAGTGGCCCCAAACCAGTTGTTCGATGTTGTGATGTTAGAGCCATGAAACGTTCAGTTACAAGAGATAGCCAAGTAGATTTTATGATGCAGGAAAATTTTAATGGTGGAGGATGTGAGCCTTCTTCACCATTGCATTTTGAAGACATTGACAAAAATGTAAATTACCAAGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGGTTACTTTGGACAAGAGGAAGAAACAAAGATTGGTAGATTTAAGGATTCCACCTCCTGTTAATGGTGTTTCACGGGAGTTAAATTGTGGTATGAATGATAAAGAGGCTCCTGGAATAACAGATGTTTGTTCATATTTCAAGAGGCACGAAAATTCTATAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAAAGTGGCCAATTTTTTATTCCTATTACTGTTCCTAGAGTATTTTACCTTAATTCTAAAGTACCCATTACAAAAGAATTTGTGGGTAGGCGTGTTAACAGAACCCTTCCCCATGGAAGGCACACCTATAACCTGTATGAGGTTGTGACTGATGAAAGTCAATTTAGATCACAGAGTAATAAACTTGCTGCTCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGACAAAACTGCTAAAAAACGAAACATTCAAGACGGGTGGAGTCTGGATGAACTTCAAATGAAGACTACACCAGAATGCAGTTATCTGGAAAAGCTAATCTCTTTCTTCTATGTGTATAATAGCATTTCTGAAGGAGGAGCTATCTACATTACTTATTTTCCTGCCACAAAATCCATAGTTGTGGTGGTGTTTAGTTCTTACCGAAACAAAGACTTGTCATCCAATTTTCTTGAAAGGAAATTTTGTGAAGCTTGTCAAATGCGCTCTGGTCAATCACAACCTCCTAAGGGTGGTATTACTTCCAAGGTTGACTATGTTGTTAACATCGAAGAAGCTGAAGTGATTTTGCAAAAATCAATAACAGAGCACAGGAGCATAAACCGTGGACCTATTGTAGCTATAATTGAGTCCCCAAATGTGCAGCTGCTGAAGTCAGCTGTGAAAGCATTAGATGATTTTCCATGCGTGAACATCCCTTATAATGTTCGTCATAGCCAATATCAGTTTCTTGGTTGGCAACAAAAAGCTGCTCAGATTGGAATGCAACGATGTGTTGCGTCATCCCAATGGTTGAATGATAGAATCTCTCTTGCAAGATATGCCCATGTACCGTTAGGAAATTTTGAACTTGATTGGAAAATTTGTACAGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAGCAGGTCCTTTGGATATCGGATGATGGTGTTCCGGATATAGGAGGCAATAATATAGAAGATGTTTGTTTTGTCGATGAGGTCAAACAACCTTTTCGAAATTGCTATGGAGCATACAGAAAAATTTCTGTGGAGCTGAAGATCCATCATTTGGCTGTCAATGCTTTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGCTGGCTTTGATGAGGCTGCATCATATGCGCCAGCATTTCCTGTCCTGAAACAATTGATTCAAAGGTGTCTTGCAGATGCAGTTACATCTGGAAATGTATATGCTGATGAAATTTTGCAGCATCTGTACCGTTGGATTTGCAGCCCCCAATCAAGGCTTCATGACCCAGCTCTTCATTGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTTCATTACGCAAATTAGGTGCCACCATTATTTTTGCGAACTTCTCAAAAGTTATCATAGACACGGGAAGGATTGATCTTTCTGCTGCTAAAGCATACTGTGATAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTCGAGTGGATTGAGCTGAAACCAGTACAGTTCTGGCACTCGCTGTTATTTATGGATCAGTACAACTATGGTGGAATTCCAGCAAAAGATGATGAAATTACAGATGCTGAATCTCGAGTTGATATATTGTCCAACTGGAGCATTGCTGAATATCTACCCAAGGAGACTCAGGATTCTTTTATTTCTATTGTTTCTCAATTTTTATACATTCCATGGAAATATGCAACCAAGCAAGCTGCAGCAAGAGCTTCGTTGCGGGACGACACGGATTTAGAATCACACATGACAGAACATCTCAAAGAACAGTTGAGTTCTTACTTCAGCAACCAACTGTTTGGGATTGTTCGTGATATTTTACTAAAACGACCTTCTGGTAGTGCCCATAAAGGAGATGCTGCATTGGAATTCATTAAGTACGTTTGTGCTGCTTTGGAACTTGACCAAAATGTCCGAGATGATGTTTGGAAAATGAAGAAGAATTTATTAAAGTATGTGAATGTAAGAGAGTTTGCACCAGAAGCTGAGTTTTCTAATCCCTGCACTTCTTTCATCTTACCCAATGTCTTTTGCAGCTATTGCAATGACTGTCGAGATTTAGACTTGTGCCGCGACTCAGTTTTACAAGCACAAGAATGGCGCTGTGCTGTGCCAGAATGTGGACAACCATACGACCAAGAAATGATAGAGAATGCTCTGATTCATATTGTGATGCAGAGAGAGCGTGCGTATCACTTGCAGTATTTGGAATGCGATCGGTGCAAGCAGGTTAAAGCGGCTCATTTGTCAGAGCAGTGTGCCTGTGCTGGCACTTTTCACTGCAAAGAAGATGACAAGGAATTTTTCAACAACATGAGGATTCTCTTGGATGTTGCCATTCGTCACAAGTTTCAACTTCTCCAAGAGCTTACCTCATGGATCTTGGTAAATTAG 5166 40.28 MVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINDLDRDLQYAIQVEGKMDLELVSNYSDVKNAIMEKLVRLRDEPVREECPLIYHLDVAAMYPNIILTNRLQPSSIVTDELCTACDFNRPGKTCLRKLEWVWRGEVFMAKKCDYYHLKRQIESEFVDSGNVRLSKPFLELPKLEQQAKLKERLKKYCQKVFREVGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGEKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKLYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDSEGKDIADSELLDYISESSTMSKSLVDYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAIPVAIFETDPEIIKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKNDKFHQQKIVDVFASSSRGKYSENNGGASSSKHVMNGKNSEDLEDFQKKKSSTSGPKPVVRCCDVRAMKRSVTRDSQVDFMMQENFNGGGCEPSSPLHFEDIDKNVNYQGWLEMKKRKWKVTLDKRKKQRLVDLRIPPPVNGVSRELNCGMNDKEAPGITDVCSYFKRHENSITRCHWQILQLVHSSQSGQFFIPITVPRVFYLNSKVPITKEFVGRRVNRTLPHGRHTYNLYEVVTDESQFRSQSNKLAALLADPEVEGIYESKVPLEFKSILQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTPECSYLEKLISFFYVYNSISEGGAIYITYFPATKSIVVVVFSSYRNKDLSSNFLERKFCEACQMRSGQSQPPKGGITSKVDYVVNIEEAEVILQKSITEHRSINRGPIVAIIESPNVQLLKSAVKALDDFPCVNIPYNVRHSQYQFLGWQQKAAQIGMQRCVASSQWLNDRISLARYAHVPLGNFELDWKICTADIFFSRALHDQQQVLWISDDGVPDIGGNNIEDVCFVDEVKQPFRNCYGAYRKISVELKIHHLAVNALLKSNQVNEMEGAGFDEAASYAPAFPVLKQLIQRCLADAVTSGNVYADEILQHLYRWICSPQSRLHDPALHCLLHKAMQKVFALLLASLRKLGATIIFANFSKVIIDTGRIDLSAAKAYCDSLLKTLQTRDLFEWIELKPVQFWHSLLFMDQYNYGGIPAKDDEITDAESRVDILSNWSIAEYLPKETQDSFISIVSQFLYIPWKYATKQAAARASLRDDTDLESHMTEHLKEQLSSYFSNQLFGIVRDILLKRPSGSAHKGDAALEFIKYVCAALELDQNVRDDVWKMKKNLLKYVNVREFAPEAEFSNPCTSFILPNVFCSYCNDCRDLDLCRDSVLQAQEWRCAVPECGQPYDQEMIENALIHIVMQRERAYHLQYLECDRCKQVKAAHLSEQCACAGTFHCKEDDKEFFNNMRILLDVAIRHKFQLLQELTSWILVN 1721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72054809 72092523 - Tan0006829.1 Tan05g2135 753443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2135 1721 MobiDBLite consensus disorder prediction 733 753 - -
Tan05g2135 1721 SMART DUF1744_2 1073 1438 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Tan05g2135 1721 SUPERFAMILY DNA/RNA polymerases 53 719 IPR043502 -
Tan05g2135 1721 CDD POLBc_epsilon 87 694 - -
Tan05g2135 1721 Gene3D - 1 89 IPR036397 GO:0003676(InterPro)
Tan05g2135 1721 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1 1691 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Tan05g2135 1721 FunFam DNA polymerase epsilon catalytic subunit 329 509 - -
Tan05g2135 1721 FunFam DNA polymerase epsilon catalytic subunit 513 697 - -
Tan05g2135 1721 Pfam Domain of unknown function (DUF1744) 1088 1438 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Tan05g2135 1721 Pfam Zinc finger domain of DNA polymerase-epsilon 1657 1719 IPR054475 -
Tan05g2135 1721 MobiDBLite consensus disorder prediction 733 751 - -
Tan05g2135 1721 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 518 693 - -
Tan05g2135 1721 Gene3D Palm domain of DNA polymerase 166 509 IPR023211 -
Tan05g2135 1721 SUPERFAMILY Ribonuclease H-like 6 74 IPR012337 -
Tan05g2135 1721 Gene3D - 513 697 IPR042087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0138 Tan-Chr5:1077891 Tan05g2135 Tan-Chr5:72054809 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2135 K02324 - csv:101208568 2900.15