Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2159 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCAGATGCTGAGGTGGTTTCCCTCTCTCCGAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGTAATCAGGGGTTTCAGAGGGATCAGAATCTCCAGATGCACCGACGTCGACACAAGGTGCCGTGGAAGCTGTTGAAGAGGACCGAGGCGGCAGCCGCGGTGAGAAAACGAGTGTTTGTTTGCCCGGAGCCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATAAAGAAGCACTTTAGAAGAAAGCATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCACATCTCAAAACCTGTGGAACTAGAGGCCATTCCTGTGATTGTGGTAGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACCTGCAAATTGGGTCATCATCAACAATCAGAAAAAATTCAATCTTTACAACCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCACACATTTACTTCAACTCATGCAGACAAATCAACAAAAACAACAACAAAAAGTCCTCAAAAAGTCATTAGCCATCATCAAAATTTGGACCTTCAACTTTCCACCACTTCAACTCCCATTCATGTTTCAGTTTCTCCAAAAAGACATGAAAATTACTCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGAAAAAAATGATAATAATTATAATTATAATGATCATTATCATATGAATAATGGTGGTGATGAGAAAATTGGAAGTGGGTTGGGTTTGTTGAAGCTGAAAGAGGAAGCTAAAGAGCAAATGAGAGTGGCAATGGAAGAAAAGGCAATGGCTGAAGAAGCAAGAAATGAAGCAAAGAGACAGATTGAATTGGCTGAGAAGGAATTGGCCAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAGTTACAAAGAGCTCTGTCTTTGAAAGAACAAGCCATCAAGAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCAATTGCCAAAAATTTGA 1239 40.52 MLADLSSPSLPCFEPLSSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEAAAAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGHHQQSEKIQSLQPPPCLSRTASSPTPSPSSDTNFSFLNQNHTFTSTHADKSTKTTTKSPQKVISHHQNLDLQLSTTSTPIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDNNYNYNDHYHMNNGGDEKIGSGLGLLKLKEEAKEQMRVAMEEKAMAEEARNEAKRQIELAEKELANAKRMRQQAQAELQRALSLKEQAIKKINSTILQITCQVCRQHFHQLPKI 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72342585 72345550 + Tan0003264.1 Tan05g2159 753467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2159 412 MobiDBLite consensus disorder prediction 23 44 - -
Tan05g2159 412 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 97 131 - -
Tan05g2159 412 FunFam protein indeterminate-domain 12-like 37 107 - -
Tan05g2159 412 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 378 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan05g2159 412 SMART c2h2final6 137 164 IPR013087 -
Tan05g2159 412 SMART c2h2final6 101 131 IPR013087 -
Tan05g2159 412 SMART c2h2final6 58 80 IPR013087 -
Tan05g2159 412 SUPERFAMILY beta-beta-alpha zinc fingers 57 157 IPR036236 -
Tan05g2159 412 Gene3D Classic Zinc Finger 45 133 - -
Tan05g2159 412 MobiDBLite consensus disorder prediction 196 253 - -
Tan05g2159 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Tan05g2159 412 CDD ATP-synt_Fo_b 328 390 - -
Tan05g2159 412 Coils Coil 327 389 - -
Tan05g2159 412 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Tan05g2159 412 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2159 Tan-Chr5:72342585 Tan05g3379 Tan-Chr5:85654811 1.60E-102 dispersed
Tan05g2159 Tan-Chr5:72342585 Tan01g4896 Tan-Chr1:114873037 4.40E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27548 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2159 K25871 - csv:101210748 643.269