Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2167 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTCCCCCCCCTCCTCCCCTCCTCCTCCGCCCCTGCCCCCGCCGCCTCCCCCGCCATCTCCTCCGCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGCACCTCCACTACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCCTACGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCGAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCCACGTTGTCAGAGGCGACGCTCGCTCACGTATCGCGTCAGGTTCTTAACGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGCAGGACTCTGGATGCCTGTAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGAGACTTACGGCGGGAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTCGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCAGTGAGCCGCCGACGCTGCCGAAGGATGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGTTTGCAGAAGGAATCGAGTAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTCTGCAAGGAACCGAGATCCGATCGGTGA 957 55.8 MALVRDRRQLNLRLPDLSDCRPRFPLPPLLPSSSAPAPAASPAISSADLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDRGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFSEPPTLPKDASEDFRSFVECCLQKESSKRWTAAQLLTHPFVCKEPRSDR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72452973 72454450 + Tan0002861.1 Tan05g2167 753475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2167 318 SMART serkin_6 49 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 SUPERFAMILY Protein kinase-like (PK-like) 50 312 IPR011009 -
Tan05g2167 318 Pfam Protein kinase domain 51 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 Gene3D Transferase(Phosphotransferase) domain 1 131 317 - -
Tan05g2167 318 ProSiteProfiles Protein kinase domain profile. 49 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 CDD PKc_MAPKK_plant_like 48 310 - -
Tan05g2167 318 FunFam Mitogen-activated protein kinase 2 130 318 - -
Tan05g2167 318 PRINTS Tyrosine kinase catalytic domain signature 161 179 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 PRINTS Tyrosine kinase catalytic domain signature 232 254 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 Gene3D Phosphorylase Kinase; domain 1 34 129 - -
Tan05g2167 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 40 312 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan05g2167 318 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524(InterPro)
Tan05g2167 318 FunFam Mitogen-activated protein kinase kinase 30 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2167 K20604 - - csv:101203133 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2825 Tan-Chr4:87704411 Tan05g2167 Tan-Chr5:72452973 1.70E-82 dispersed
Tan05g2167 Tan-Chr5:72452973 Tan09g1114 Tan-Chr9:63452776 1.70E-59 dispersed
Tan05g2167 Tan-Chr5:72452973 Tan08g0048 Tan-Chr8:531752 1.50E-63 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1114 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 1.6e-135 479.9
Tan08g0048 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.9 5.0e-126 448.4
Tan08g0109 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 3.6e-108 389.0
Tan09g1114 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.9 7.6e-135 477.6
Tan08g0048 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 64.3 1.7e-118 423.3
Tan08g0109 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.2e-110 396.4
Tan07g1394 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.7 3.5e-229 791.6
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.0e-129 459.1
Tan05g2167 . 47 310 MAP Kinase Kinase Gene Family AT1G51660 55.7 9.6e-83 304.7
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.8 4.9e-129 458.4
Tan05g2167 . 41 312 MAP Kinase Kinase Gene Family AT3G21220 54.8 9.7e-85 311.2
Tan08g0109 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Tan09g1114 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 1.2e-119 427.2
Tan08g0048 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 1.9e-107 386.7
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 63.0 1.9e-108 389.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.9e-76 283.5
Tan05g2167 . 1 298 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.1e-81 300.8
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.8e-114 409.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G73500 52.8 3.0e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67640 PF00069 Pkinase 6.70E-66 CL0016 Tan PK