Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2167 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTCCCCCCCCTCCTCCCCTCCTCCTCCGCCCCTGCCCCCGCCGCCTCCCCCGCCATCTCCTCCGCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGCACCTCCACTACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCCTACGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCGAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCCACGTTGTCAGAGGCGACGCTCGCTCACGTATCGCGTCAGGTTCTTAACGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGCAGGACTCTGGATGCCTGTAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGAGACTTACGGCGGGAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTCGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCAGTGAGCCGCCGACGCTGCCGAAGGATGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGTTTGCAGAAGGAATCGAGTAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTCTGCAAGGAACCGAGATCCGATCGGTGA 957 55.8 MALVRDRRQLNLRLPDLSDCRPRFPLPPLLPSSSAPAPAASPAISSADLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDRGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFSEPPTLPKDASEDFRSFVECCLQKESSKRWTAAQLLTHPFVCKEPRSDR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72452973 72454450 + Tan0002861.1 Tan05g2167 753475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2167 318 SMART serkin_6 49 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 SUPERFAMILY Protein kinase-like (PK-like) 50 312 IPR011009 -
Tan05g2167 318 Pfam Protein kinase domain 51 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 Gene3D Transferase(Phosphotransferase) domain 1 131 317 - -
Tan05g2167 318 ProSiteProfiles Protein kinase domain profile. 49 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 CDD PKc_MAPKK_plant_like 48 310 - -
Tan05g2167 318 FunFam Mitogen-activated protein kinase 2 130 318 - -
Tan05g2167 318 PRINTS Tyrosine kinase catalytic domain signature 161 179 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 PRINTS Tyrosine kinase catalytic domain signature 232 254 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 Gene3D Phosphorylase Kinase; domain 1 34 129 - -
Tan05g2167 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2167 318 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 40 312 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan05g2167 318 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524(InterPro)
Tan05g2167 318 FunFam Mitogen-activated protein kinase kinase 30 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2825 Tan-Chr4:87704411 Tan05g2167 Tan-Chr5:72452973 1.70E-82 dispersed
Tan05g2167 Tan-Chr5:72452973 Tan09g1114 Tan-Chr9:63452776 1.70E-59 dispersed
Tan05g2167 Tan-Chr5:72452973 Tan08g0048 Tan-Chr8:531752 1.50E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67640 PF00069 Pkinase 6.70E-66 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2167 K20604 - csv:101203133 575.859