Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2172 ATGCGAACCCAGATGGCAATTCCTTTGCTTTTTGCTTTCTTTCTTCTACTCCCCACTGTGAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCCGCTGTCGGTGGCCGAACTCTTCTGCTTTGGAATGTGACTGATCAGAACACCTGTTCTTGGCCTGGGATTCAATGCGAGGAAAATCGTGTTACTGTTCTTCGTCTTCCCGGGGCCGCGCTTTCCGGCCAATTACCGGTTGGGGTTTTTGGGAACTTGACTCACCTTCGCACTCTCAGTCTTCGGCTCAACGCCCTTTCCGGTCACCTCCCCTCAGATCTCTCCGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCTTGTCCCTGGTTTCTTGTTCCAGCTTCCCGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCGGGCGAGATCTCATTGGGGTTCAACAATTTGACCCGTCTTAAGACTTTGTTCCTTGAAAACAATCATCTCTCTGGGTCTATCCCGGACTTGAAGATCCCTCTGGATCAGTTCAATGTTTCTAACAATCAGTTAAATGGGTCGGTTCCAAAGGGATTGCAGTCGTTTTCTTCGAGTTCGTTTTTGGGTAATTCTCTCTGTGGGCGTCCGCTTGAGGTTTGCTCTGGTGATATTACTGTGCCGACAGGGGAGGTTGGGATCAATGTTGGTTCTCAACACAAGAAAAAGCTGTCAGGGGGAGCCATTGCTGGGATTGTCATTGGATCTGTACTGGGTTTTATATTGATACTTGTAATCTTATTGCTTTTGTGCCGAAAGAAGAGTGCTAAGAAAACAAGTTCAGTCGATGTTGCCACAGTGAAGCATCCTGAAGTGGAAGTTCAGGGCGGTAAGCCTCCTGGGGAAGTTGAAAATGGCGGTTACAGTAATGGTTATACTGTGCCAGCCGCTGCTGCTGTTGCAACAGTGGCGGCAGGGACTGCAAAAGGGGAAGTGAATGGCACTGGAACTGGGTCTAAAAAATTGGTGTTTTTTGGTAATGCTGCAAGGGTATTTGATTTGGAGGATCTTTTGAGAGCTTCAGCAGAAGTGTTGGGAAAAGGAACCTTTGGGACTGCTTACAAAGCAGTTCTGGAAGTGGGTTCTGTAGTGGCTGTGAAGAGGTTGAAGGATGTTACCATCACCGAGAGAGAATTCAGGGAGAAGATTGAAGCTGTTGGATCTATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTATCTGCTCTTTTACATGGAAACAAAGGAGCTGGTAGGACTCCATTGAATTGGGAAATCAGGTCTGGAATTGCCCTTGGAGCTGCTCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCATCCAATATTCTTCTAACCAAATCCTATGATGCTCGGGTCTCTGATTTCGGATTAGCACATCTTGTTGGACCACCTTCCAGCCCCAACAGAGTTGCTGGATACCGTGCACCAGAGGTCACTGATCCTCGTAAAGTATCTCAGAAGGCTGATGTCTATAGCTTTGGAGTATTGCTCTTGGAGCTTTTGACAGGAAAGGCTCCTACTCACTCCCTTTTAAATGAGGAAGGAGTTGATTTACCCAGATGGGTGCAGTCAGTTGTTAGAGAGGAGTGGACTTCTGAAGTTTTCGACCTCGAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTATTGCAGCTTGCAGTTGATTGCGCAGCTCAGTATCCCGATAAGCGTCCCACAATGCTCGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCATTCATGAAGTTGTCAATCCACAACCGGACGCGGCTCATGATTCAGACGACGCGTCTTCTAGGTGA 1968 46.75 MRTQMAIPLLFAFFLLLPTVKPDLASDRTALLALRSAVGGRTLLLWNVTDQNTCSWPGIQCEENRVTVLRLPGAALSGQLPVGVFGNLTHLRTLSLRLNALSGHLPSDLSACINLRNLYLQGNEFSGLVPGFLFQLPDLVRLNLASNNFSGEISLGFNNLTRLKTLFLENNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGRPLEVCSGDITVPTGEVGINVGSQHKKKLSGGAIAGIVIGSVLGFILILVILLLLCRKKSAKKTSSVDVATVKHPEVEVQGGKPPGEVENGGYSNGYTVPAAAAVATVAAGTAKGEVNGTGTGSKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPPSSPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPTMLEVTKRIEELRQSSIHEVVNPQPDAAHDSDDASSR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72517349 72520493 + Tan0021493.1 Tan05g2172 753480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2172 655 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Tan05g2172 655 FunFam pollen receptor-like kinase 1 330 435 - -
Tan05g2172 655 Gene3D Phosphorylase Kinase; domain 1 333 435 - -
Tan05g2172 655 FunFam Probable inactive receptor kinase RLK902 24 181 - -
Tan05g2172 655 MobiDBLite consensus disorder prediction 633 655 - -
Tan05g2172 655 SUPERFAMILY L domain-like 26 208 - -
Tan05g2172 655 Gene3D Ribonuclease Inhibitor 184 223 IPR032675 -
Tan05g2172 655 FunFam Probable inactive receptor kinase At1g48480 436 638 - -
Tan05g2172 655 CDD STKc_IRAK 367 630 - -
Tan05g2172 655 PANTHER OS05G0588300 PROTEIN 6 647 IPR050994 -
Tan05g2172 655 Pfam Protein kinase domain 365 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2172 655 Gene3D Transferase(Phosphotransferase) domain 1 436 651 - -
Tan05g2172 655 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Tan05g2172 655 SUPERFAMILY Protein kinase-like (PK-like) 365 627 IPR011009 -
Tan05g2172 655 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524(InterPro)
Tan05g2172 655 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Tan05g2172 655 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515(InterPro)
Tan05g2172 655 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515(InterPro)
Tan05g2172 655 ProSiteProfiles Protein kinase domain profile. 361 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3171 Tan-Chr1:85324938 Tan05g2172 Tan-Chr5:72517349 1.50E-52 dispersed
Tan01g3172 Tan-Chr1:85325688 Tan05g2172 Tan-Chr5:72517349 1.60E-52 dispersed
Tan02g2602 Tan-Chr2:94651665 Tan05g2172 Tan-Chr5:72517349 5.70E-65 dispersed
Tan04g2049 Tan-Chr4:73851742 Tan05g2172 Tan-Chr5:72517349 6.70E-172 dispersed
Tan05g2172 Tan-Chr5:72517349 Tan11g1423 Tan-Chr11:12810938 8.70E-135 dispersed
Tan05g2172 Tan-Chr5:72517349 Tan08g0198 Tan-Chr8:1771376 1.00E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67641 PF00069 Pkinase 6.30E-39 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2172 - - - 0.0