Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2194 ATGCGTGAGATTCTGCACATTCAGGGAGGGCAATGTGGGAACCAAATTGGATCGAAGTTCTGGGAGGTGGTTTGTGACGAGCATGGCATCGATCCGACGGGCAGGTACGCTGGAAATTCAGAACTCCAGCTAGAGAGAGCGAACGTGTATTACAATGAAGCGAGTGGCGGGAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACAATGGACGCCGTTAGAACGGGACCGTACGGGCAGATTTTCCGACCAGACAACTTTGTGTTCGGGCAATCCGGTGCCGGGAACAATTGGGCTAAAGGCCATTACACAGAAGGTGCAGAGCTCATTGATTCAGTGCTTGATGTTGTCAGGAAGGAGGCTGAGAATTGTGATTCTCTTCAGGGGTTTCAAGTGTGTCATTCACTTGGAGGTGGAACAGGATCTGGAATGGGAACTCTTCTGATCTCCAAGATCAGGGAAGAATATCCAGATAGAATGATGCTAACTTTCTCAGTGTTCCCATCTCCAAAAGTGTCTGACACTGTTGTGGAGCCATATAATGCTACTCTTTCAGTCCATCAATTGGTAGAGAATGCTGATGAATGTATGGTACTTGACAATGAAGCACTCTATGACATCTGTTTTAGAACCCTCAAACTCACCACCCCAAGTTTGGGAGTTACCTGTTGTTTGAGATTCCCTGGCCAGCTGAATTCAGACCTCCGAAAACTGGCGGTCAACTTAATTCCTTTCCCTCGACTTCACTTCTTCATGGTCGGGTTCGCACCTTTGACATCTCGTGGATCGCAGCAGTACAGAGCACTGACGGTTCCTGAACTGACACAGCAAATGTGGGATGCCAAGAACATGATGTGTGCAGCCGATCCACGCCACGGTCGATATCTTACAGCATCTGCCATGTTTAGAGGTAAAATGAGTACCAAAGAAGTTGACGAGCAGATGATGAATGTGCAGAACAAAAACTCTTCCTACTTTGTAGAATGGATTCCAAATAATGTCAAATCTAGTGTTTGTGACATTCCACCTAAAGGGTTCCCCATGGCTTCCACTTTTGTTGGAAATTCAACTTCAATTCAGGAGATGTTTAGAAGAGTGAGTGAGCAGTTCACAGCCATGTTTAGAAGGAAGGCCTTCTTGCACTGGTATACTGGAGAAGGAATGGATGAGATGGAGTTTACTGAAGCAGAAAGCAACATGAATGATCTTGTTGCTGAGTATCAACAGTATCAAGATGCCACAGCTGATGAAGACATTGACTATGAAGATGACGATGGGGACGCAGAAAATTAA 1302 46.62 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGNSELQLERANVYYNEASGGRYVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDSLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSLGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPKGFPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDIDYEDDDGDAEN 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72902797 72905153 - Tan0014260.1 Tan05g2194 753502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2194 433 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 358 386 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 Coils Coil 396 416 - -
Tan05g2194 433 SMART Tubulin_C_4 234 371 IPR018316 -
Tan05g2194 433 FunFam Tubulin beta chain 1 250 - -
Tan05g2194 433 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 253 269 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 317 331 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 400 418 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 335 358 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 218 227 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 365 376 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 299 317 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 233 246 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan05g2194 433 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 231 IPR036525 -
Tan05g2194 433 CDD beta_tubulin 2 414 - -
Tan05g2194 433 PANTHER TUBULIN 1 414 IPR000217 GO:0000226(PANTHER)|GO:0000278(PANTHER)|GO:0005200(PANTHER)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005874(InterPro)|GO:0005874(PANTHER)|GO:0007017(InterPro)
Tan05g2194 433 Gene3D Helix hairpin bin 362 418 IPR023123 -
Tan05g2194 433 Gene3D - 251 361 IPR037103 -
Tan05g2194 433 FunFam Tubulin beta chain 252 361 - -
Tan05g2194 433 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525(InterPro)
Tan05g2194 433 SMART Tubulin_4 47 232 IPR003008 GO:0005525(InterPro)
Tan05g2194 433 SUPERFAMILY Tubulin C-terminal domain-like 232 417 IPR008280 -
Tan05g2194 433 FunFam Tubulin beta chain 362 423 - -
Tan05g2194 433 Pfam Tubulin C-terminal domain 249 370 IPR018316 -
Tan05g2194 433 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Tan05g2194 433 Gene3D Tubulin/FtsZ, GTPase domain 1 250 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2194 K07375 - - csv:101220108 835.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2194 Tan-Chr5:72902797 Tan05g2715 Tan-Chr5:79027125 1.10E-239 dispersed
Tan05g2194 Tan-Chr5:72902797 Tan08g2069 Tan-Chr8:72757292 2.60E-236 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220