Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g2195 | ATGAAGATGTGGATGATGGGTTACAATGAGGGGGGAGATTTGAACTTTGGTTCTGATTCATTCAATAATGGTCGAAAACTAAGGCCTCTCATTCCTCGTTCTCTCTCTTCTCTTTCCACCACTTCTTCTTCTTCTAACACTATCAATAATAATCCTCCTTTAAACCTTATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACCGTGACTGATCAAAGCAAGAGAGAGTTGAATAATGCGCTGTCGCCACCTGTAGTGGTGAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGATTGCTGGAAGAACTCTACCGGCGGGGGACTCGAACACCGTCGGCGGATCAAATTCAACATATCACTGCACAGCTTCGTCGTTTTGGTAAGATCGAAGGTAAGAATGTGTTCTACTGGTTTCAGAATCACAAAGCAAGAGAGCGCCAAAAACGACGCCGCCAGATGGAATCCGCCGACCACTCGACTCGCGATATCGAAATCCTCGACAGGAAAGATACAGGGTCCGGTAGGACAGTCTATGAAGTTGAACAGACCAAAAACTGGGCTCCCTCTACAAACTGCAGTACACTTGTGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCTAGTCTAATGGCAGCAGCAGATTGCAGGACAGAAAATGGATGGCTCCAATTCGAGGAATTACACCAAAGAAGGAATAACAACAACTTTGCTGAAAAAAATAGTAATAACATCAACAACAACAATAATGCACCATCCTTGCAGTTGATCCATTGTTCGGCGGCTGCTCTCGGAGGCGGAGGCGGTGGCGGTGGCGGGCAACTGATGATGAACACTGCCCCCATCACCACCACAGCCATAGTTACAACAATAATGCACCAAAACTCTCATAGTAATCTTTCAGGCTTTGTTGGACCTTATGAACAAAATGGGGTTGAAGAAGAATTAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGGATGTGGGGAATCAGAAACCTTACAACTTTTTCCTTTGTGCAGTGACATAAGAAATGGTGAGATTATTGGAGGAAAAAATGGGTGTGAAACAGTGGAAAGTTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA | 1161 | 44.7 | MKMWMMGYNEGGDLNFGSDSFNNGRKLRPLIPRSLSSLSTTSSSSNTINNNPPLNLIHTNDFFSQFHHMATVTDQSKRELNNALSPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESADHSTRDIEILDRKDTGSGRTVYEVEQTKNWAPSTNCSTLVEESVPIQRAAKASLMAAADCRTENGWLQFEELHQRRNNNNFAEKNSNNINNNNNAPSLQLIHCSAAALGGGGGGGGGQLMMNTAPITTTAIVTTIMHQNSHSNLSGFVGPYEQNGVEEELEELEEEEEEEEGCGESETLQLFPLCSDIRNGEIIGGKNGCETVESSGMNSTNLTPLQFFEFLPLKN | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 72919538 | 72922718 | + | Tan0001726.1 | Tan05g2195 | 753503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g2195 | 386 | SUPERFAMILY | Homeodomain-like | 92 | 158 | IPR009057 | - | |
Tan05g2195 | 386 | ProSiteProfiles | 'Homeobox' domain profile. | 97 | 152 | IPR001356 | GO:0003677(InterPro) | |
Tan05g2195 | 386 | Pfam | Homeodomain | 92 | 151 | IPR001356 | GO:0003677(InterPro) | |
Tan05g2195 | 386 | Coils | Coil | 313 | 336 | - | - | |
Tan05g2195 | 386 | Gene3D | - | 90 | 152 | - | - | |
Tan05g2195 | 386 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 86 | 382 | IPR044555 | GO:0003700(InterPro)|GO:0099402(InterPro) | |
Tan05g2195 | 386 | SMART | HOX_1 | 89 | 156 | IPR001356 | GO:0003677(InterPro) | |
Tan05g2195 | 386 | MobiDBLite | consensus disorder prediction | 153 | 172 | - | - | |
Tan05g2195 | 386 | CDD | homeodomain | 93 | 153 | IPR001356 | GO:0003677(InterPro) | |
Tan05g2195 | 386 | MobiDBLite | consensus disorder prediction | 150 | 172 | - | - | |
Tan05g2195 | 386 | FunFam | WUSCHEL-related homeobox 4 | 91 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g1790 | Tan-Chr2:83246506 | Tan05g2195 | Tan-Chr5:72919538 | 7.60E-25 | dispersed | |
Tan02g1791 | Tan-Chr2:83246506 | Tan05g2195 | Tan-Chr5:72919538 | 1.00E-24 | dispersed | |
Tan03g2067 | Tan-Chr3:75622919 | Tan05g2195 | Tan-Chr5:72919538 | 1.50E-22 | dispersed | |
Tan05g0321 | Tan-Chr5:2394115 | Tan05g2195 | Tan-Chr5:72919538 | 1.70E-22 | dispersed | |
Tan05g2195 | Tan-Chr5:72919538 | Tan11g0257 | Tan-Chr11:2041207 | 4.20E-20 | dispersed | |
Tan05g2195 | Tan-Chr5:72919538 | Tan09g1827 | Tan-Chr9:69661710 | 4.10E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27553 | PF00046 | Homeodomain | 5.50E-19 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g2195 | - | - | - | 0.0 |