Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2195 ATGAAGATGTGGATGATGGGTTACAATGAGGGGGGAGATTTGAACTTTGGTTCTGATTCATTCAATAATGGTCGAAAACTAAGGCCTCTCATTCCTCGTTCTCTCTCTTCTCTTTCCACCACTTCTTCTTCTTCTAACACTATCAATAATAATCCTCCTTTAAACCTTATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACCGTGACTGATCAAAGCAAGAGAGAGTTGAATAATGCGCTGTCGCCACCTGTAGTGGTGAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGATTGCTGGAAGAACTCTACCGGCGGGGGACTCGAACACCGTCGGCGGATCAAATTCAACATATCACTGCACAGCTTCGTCGTTTTGGTAAGATCGAAGGTAAGAATGTGTTCTACTGGTTTCAGAATCACAAAGCAAGAGAGCGCCAAAAACGACGCCGCCAGATGGAATCCGCCGACCACTCGACTCGCGATATCGAAATCCTCGACAGGAAAGATACAGGGTCCGGTAGGACAGTCTATGAAGTTGAACAGACCAAAAACTGGGCTCCCTCTACAAACTGCAGTACACTTGTGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCTAGTCTAATGGCAGCAGCAGATTGCAGGACAGAAAATGGATGGCTCCAATTCGAGGAATTACACCAAAGAAGGAATAACAACAACTTTGCTGAAAAAAATAGTAATAACATCAACAACAACAATAATGCACCATCCTTGCAGTTGATCCATTGTTCGGCGGCTGCTCTCGGAGGCGGAGGCGGTGGCGGTGGCGGGCAACTGATGATGAACACTGCCCCCATCACCACCACAGCCATAGTTACAACAATAATGCACCAAAACTCTCATAGTAATCTTTCAGGCTTTGTTGGACCTTATGAACAAAATGGGGTTGAAGAAGAATTAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGGATGTGGGGAATCAGAAACCTTACAACTTTTTCCTTTGTGCAGTGACATAAGAAATGGTGAGATTATTGGAGGAAAAAATGGGTGTGAAACAGTGGAAAGTTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1161 44.7 MKMWMMGYNEGGDLNFGSDSFNNGRKLRPLIPRSLSSLSTTSSSSNTINNNPPLNLIHTNDFFSQFHHMATVTDQSKRELNNALSPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESADHSTRDIEILDRKDTGSGRTVYEVEQTKNWAPSTNCSTLVEESVPIQRAAKASLMAAADCRTENGWLQFEELHQRRNNNNFAEKNSNNINNNNNAPSLQLIHCSAAALGGGGGGGGGQLMMNTAPITTTAIVTTIMHQNSHSNLSGFVGPYEQNGVEEELEELEEEEEEEEGCGESETLQLFPLCSDIRNGEIIGGKNGCETVESSGMNSTNLTPLQFFEFLPLKN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72919538 72922718 + Tan0001726.1 Tan05g2195 753503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2195 386 SUPERFAMILY Homeodomain-like 92 158 IPR009057 -
Tan05g2195 386 ProSiteProfiles 'Homeobox' domain profile. 97 152 IPR001356 GO:0003677(InterPro)
Tan05g2195 386 Pfam Homeodomain 92 151 IPR001356 GO:0003677(InterPro)
Tan05g2195 386 Coils Coil 313 336 - -
Tan05g2195 386 Gene3D - 90 152 - -
Tan05g2195 386 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 86 382 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Tan05g2195 386 SMART HOX_1 89 156 IPR001356 GO:0003677(InterPro)
Tan05g2195 386 MobiDBLite consensus disorder prediction 153 172 - -
Tan05g2195 386 CDD homeodomain 93 153 IPR001356 GO:0003677(InterPro)
Tan05g2195 386 MobiDBLite consensus disorder prediction 150 172 - -
Tan05g2195 386 FunFam WUSCHEL-related homeobox 4 91 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1790 Tan-Chr2:83246506 Tan05g2195 Tan-Chr5:72919538 7.60E-25 dispersed
Tan02g1791 Tan-Chr2:83246506 Tan05g2195 Tan-Chr5:72919538 1.00E-24 dispersed
Tan03g2067 Tan-Chr3:75622919 Tan05g2195 Tan-Chr5:72919538 1.50E-22 dispersed
Tan05g0321 Tan-Chr5:2394115 Tan05g2195 Tan-Chr5:72919538 1.70E-22 dispersed
Tan05g2195 Tan-Chr5:72919538 Tan11g0257 Tan-Chr11:2041207 4.20E-20 dispersed
Tan05g2195 Tan-Chr5:72919538 Tan09g1827 Tan-Chr9:69661710 4.10E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27553 PF00046 Homeodomain 5.50E-19 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2195 - - - 0.0