Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2200 ATGAAGAACCTCCTCAAGAAGTTCCATATCATGTCCAGTGGTCAGTCAGACGATGCAGCAGAAGGGTCTACTTCATCGAGGGGCAGTAAATTAATTGAGTTTTCATCGCCTGATAAGCTGCCATCTCGCTCTCGGCCGACCCATTTTAATTCGGAGCATAAACCCTTCTCGGGGATTTCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGCCCTCCATCATCTTCGAATCCCACTGCAGGGGAGATAATGGAGCCATCTGATTCAGTATCTAGCAGAGATGCTGCAATGGATGCATCAAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCCAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATACTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTTACCAAGTCCATCTCTGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATCAATAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACAGCATTGGAGATGGCCATCAAAGTGAGGTCGGAGTCTCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCGGATCATATGGGGGGACCAGTGGGGGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGTAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCGGATGGTGTGGATATCCCTTGTAGGTTGGTGAAAGGGCCAGAGTATACAGGTTCTGATGATGTGGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAGTTCATTGTGGATTTAATGGCAGATCCTGGTACACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGAATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCCTCTTCAAGCAGTGGGGTTGGCAGTTCGTTAGAGGAAAATTCAGACTTTGGGACATCAGATCGGAAACCAAAGTCCCGAAATTTCAGTGCCACAAAGGAATATGATCCTCCCAATGTTGACAAGGGGCTATCACGTGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAAGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGCCTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGCGGTGTAGTTGCACCCCCTAACTTGTTTACCGAGGCATACCCTGATCAAATAGATGTTATTGTTGAGTCTAAGCCACCAACTGAAGACAGGGATCAAAATAGAAAGGTGCCCGGTCTATGTGAAAGTGTAGATAAGAAAGATCCTCGTCCAGCTAACTTTTTGCCTCCTTTGCCTCAGCCCAGACTGCATCCTAAAGCAAGCCCTACACATGGCCAACAACAGCATCTTAAACCTCTGGAACTCAACCTCTCTCTTGATTCAAGAGAAGCAGTCGGACAACCTATAGCCTTACCATTTGAGGTAACTCCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCTGCAGCTGTTGTTGCATCATCAATGGTAGTAGCTGCAGCAAAGAGTACTGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACTGCCACTGCTGCTGCAGTGGTTGCAACAACTGCCGCAGTCAACAAGCAGTATGAGCAGGCTGAGGCTGATGCTGCTCTTTATGAGCAGCGTGGAAGTGGAGATAGGGAGCATGATGCTTATGGAGAAAATTCAGAGGGTGAACGAATATCAGACAGATCAGCAGGGAATGAAAGCACAAAATCCGATATTACCCTTGACGACGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGACTTGGGTCTTACGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGATATTTCGGGTGAATCTCTTGAAGAATTCAAAAGTGAGGTACGAATTATGAAAAGGCTTCGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCAATCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGTTTGAGAATGGCCCTCGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACACCTGTCATTGTACATCGCGATTTGAAGTCCCCAAATCTTCTTGTTGATAAAAATTGGGTTGTGAAGGTATGCGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCTGGAACGGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACCTTCAGATGAAAAGTGTGACGTTTATAGTTACGGAGTTATTCTGTGGGAGCTTTCTACAATGCAACAACCATGGGGAGGAATGAACCCGATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCTGACAATATGGATCCTGCCATTGCTGACATTATAAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCGTCCTTTGCCGAGATCATGGCTGCACTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCAAGACCAAATGCTTCTGCAGGTAGTAGTCGAGAGAAGGCTCGATTAGCACAAGTTGCTGAAGACCCATCAGGCTAG 3036 45.72 MKNLLKKFHIMSSGQSDDAAEGSTSSRGSKLIEFSSPDKLPSRSRPTHFNSEHKPFSGISGWLNSVTNRRSPSPPSSSNPTAGEIMEPSDSVSSRDAAMDASRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTKSISERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKVRSESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVDIPCRLVKGPEYTGSDDVAMNFVKIDDGREFIVDLMADPGTLIPADVAGSHVEYDESPFSASPLSRDVDSSQAASSSSGVGSSLEENSDFGTSDRKPKSRNFSATKEYDPPNVDKGLSRDFASKPNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKPPTEDRDQNRKVPGLCESVDKKDPRPANFLPPLPQPRLHPKASPTHGQQQHLKPLELNLSLDSREAVGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQAEADAALYEQRGSGDREHDAYGENSEGERISDRSAGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNASAGSSREKARLAQVAEDPSG 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72948055 72962228 - Tan0008082.1 Tan05g2200 753508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2200 1011 MobiDBLite consensus disorder prediction 673 699 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 380 405 - -
Tan05g2200 1011 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524(InterPro)
Tan05g2200 1011 MobiDBLite consensus disorder prediction 1 116 - -
Tan05g2200 1011 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 MobiDBLite consensus disorder prediction 978 1011 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 97 116 - -
Tan05g2200 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 FunFam Serine/threonine-protein kinase CTR1 801 984 - -
Tan05g2200 1011 Gene3D Transferase(Phosphotransferase) domain 1 801 986 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 978 992 - -
Tan05g2200 1011 FunFam Serine/threonine-protein kinase isoform 1 713 800 - -
Tan05g2200 1011 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 16 32 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 373 457 - -
Tan05g2200 1011 SUPERFAMILY Protein kinase-like (PK-like) 705 972 IPR011009 -
Tan05g2200 1011 PANTHER SERINE-THREONINE PROTEIN KINASE 75 975 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Tan05g2200 1011 MobiDBLite consensus disorder prediction 673 707 - -
Tan05g2200 1011 SMART serkin_6 722 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2200 1011 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 519 544 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 519 570 - -
Tan05g2200 1011 CDD STKc_MAP3K-like 728 974 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 51 88 - -
Tan05g2200 1011 Coils Coil 654 674 - -
Tan05g2200 1011 MobiDBLite consensus disorder prediction 406 420 - -
Tan05g2200 1011 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4633 Tan-Chr1:112249560 Tan05g2200 Tan-Chr5:72948055 2.50E-194 dispersed
Tan05g0736 Tan-Chr5:5240538 Tan05g2200 Tan-Chr5:72948055 8.80E-73 dispersed
Tan05g0737 Tan-Chr5:5240538 Tan05g2200 Tan-Chr5:72948055 8.80E-73 dispersed
Tan05g2200 Tan-Chr5:72948055 Tan09g0553 Tan-Chr9:49097452 9.50E-165 dispersed
Tan05g2200 Tan-Chr5:72948055 Tan05g2201 Tan-Chr5:72948055 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67642 PF07714 PK_Tyr_Ser-Thr 2.60E-67 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2200 - - - 0.0