Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2238 ATGGATTTCAAGAGAACCCCTTTTCTTTTTATCGTCTTCTTCATCATCTTAACTCGCCAAACTCTGTCCTCAGACCATAAGTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGTCCAAATATTAGCTACCCTTTCAGGATAGCTCATTCGCATAGCCCCTTCTGTGGACATCCAAGCTTCGAAATCGCCTGCAAAGATGAAAACCCAGTTATCAGAATTTCAAAAGATGATTATATTATCAGAGAAATCTCCTATCAAAGCCATTATTTTCATGTGGCAAATACTGCGGTTTACGAGATGAAATGCCCAACTCCTCTTCATAACTCTAGCCTCAACCGAACCCCCTTCACTTACAGTTCAAATCATATCGGTTTCTTCTTCTATTATAACTGTACTTCCCTTCCTCCCAATTATAGCTACCCAATTCATTGTTCAAGCAAAAGCGAACTCCATTCTTTTGCTGCTTTCCATGATGGGTTTTTGGAGCTTATGAACTTCTCTTTCAATTCTTGTCAATCCTCGGTTGAGGTGCCTGTAGACATTACTAATGAGGATGATGATTTTTCTGAGTTGTTGAGGAAGAATTATTCTGATATCTTGAAGATGGGTTTCACTTTAAATTGGAGTGCTAAAAACTGTACCAACTGTGAGACAAGTGGTGGCCAATGTGGGTTCGAAAGCAACGAGTTTGTTTGCTTTTGTCCTGATGGACCTCATCTCGAAGCCTGCAAAGAGGATAAAAATGATAACTGGAGGAAGCCCGTCATAGGTGTTTGCTCTGGTATTGGAGGCGTATTGATAATGAGTGTAGTCTTTTTCATCTGGTTTCGTTTGCACAAAAAGAAGCTTGCTCGTGCTTATGCTCCTTCCTCCTTTCTCCTACGAAACAATTCTAGTGAACCTCCAGCGAAGGAACTTGAGAACGGAGAAAATTACATGGGAGCACCTCTGTTCTCTTATGAAGAACTTGAAAAGGCCACTGACAGATTTAATCCGGCCAAAGAACTTGGAGATGGTGGCTTTGGCACTGTCTACTATGGCAAACTCCAAGATGGGCGTGAGGTCGCAGTTAAACGAATGTTCGAAAATAACTACAGACAAGTTGAGCACTTCATGAATGAAGTTGAGATCCTTACTCGTTTGCGCCATCCACATCTAGTCACCCTTTATGGATGCACCTCTCGACGCTGTCGTGAACTCTTGCTGGTTTATGAATTCATTCCGAACGGTACCGTTGCCGATCATCTTCATGGCACTCGAGCAAAACCTGGTGAGCTTGCATGGGATACAAGGCTGAAGATTGCCATAGAGACTGCAAGTGCTCTAGCTTTTCTCCATGCTTCCGAGACCATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAGCAACTTCGGTGTTAAAGTCGCCGATTTCGGACTATCTCGCCTTTTTCCTACGCAAGCCACACATATTTCAACTGCTCCACAAGGAACTCCTGGTTACGTCGATCCAGAGTATCATGAATGTTATCAACTTACAAATAAAAGTGATGTCTTTAGCTTTGGAGTCGTCTTGGTTGAGCTTATATCTTCAAAGCCAGCCGTTGATATCACAAGGCACAGACATGAGATTAACTTGTGGACAATGGCGATCAACAAGATTCGAAACGACGAATTACACGACTTTGTAGATCCATCTCTTGGATTTGAAACAGAGGAAAAGGTTAAAGAAATGATATGTGCAGTTGCAGAGTTGGCATTTCGATGCTTACAAAGTGTGAAGGACACAAGGCCGTCTATGTCGGAGGCATTGGAAATTCTAAAGAACATAGAGAGTCAGAGTAGTGGGAAAGGAAACACAGAAGGAATAGACATTATTTCAGGAGAAGATGATGTTCTCCTGAAAGGTGGTTTAGTGCCAGAGTCTCCAGATTCTGTTGTCGTACCTTGGATGAGCAAATCTTCAACACCAAATGTTAGTGGCTAA 1974 42.45 MDFKRTPFLFIVFFIILTRQTLSSDHKFEACAPKSCGKGPNISYPFRIAHSHSPFCGHPSFEIACKDENPVIRISKDDYIIREISYQSHYFHVANTAVYEMKCPTPLHNSSLNRTPFTYSSNHIGFFFYYNCTSLPPNYSYPIHCSSKSELHSFAAFHDGFLELMNFSFNSCQSSVEVPVDITNEDDDFSELLRKNYSDILKMGFTLNWSAKNCTNCETSGGQCGFESNEFVCFCPDGPHLEACKEDKNDNWRKPVIGVCSGIGGVLIMSVVFFIWFRLHKKKLARAYAPSSFLLRNNSSEPPAKELENGENYMGAPLFSYEELEKATDRFNPAKELGDGGFGTVYYGKLQDGREVAVKRMFENNYRQVEHFMNEVEILTRLRHPHLVTLYGCTSRRCRELLLVYEFIPNGTVADHLHGTRAKPGELAWDTRLKIAIETASALAFLHASETIHRDVKTTNILLDSNFGVKVADFGLSRLFPTQATHISTAPQGTPGYVDPEYHECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLWTMAINKIRNDELHDFVDPSLGFETEEKVKEMICAVAELAFRCLQSVKDTRPSMSEALEILKNIESQSSGKGNTEGIDIISGEDDVLLKGGLVPESPDSVVVPWMSKSSTPNVSG 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73307977 73312270 + Tan0014882.3 Tan05g2238 753546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2238 657 SMART serkin_6 331 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2238 657 Pfam Wall-associated receptor kinase C-terminal 165 238 IPR032872 -
Tan05g2238 657 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247(InterPro)
Tan05g2238 657 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2238 657 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 652 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Tan05g2238 657 FunFam Wall-associated receptor kinase-like 20 408 616 - -
Tan05g2238 657 Pfam Protein tyrosine and serine/threonine kinase 334 601 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2238 657 Gene3D Transferase(Phosphotransferase) domain 1 408 623 - -
Tan05g2238 657 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524(InterPro)
Tan05g2238 657 SUPERFAMILY Protein kinase-like (PK-like) 313 606 IPR011009 -
Tan05g2238 657 Gene3D Phosphorylase Kinase; domain 1 304 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0822 Tan-Chr4:6988704 Tan05g2238 Tan-Chr5:73307977 1.50E-133 dispersed
Tan04g1137 Tan-Chr4:10612012 Tan05g2238 Tan-Chr5:73307977 1.60E-77 dispersed
Tan05g2236 Tan-Chr5:73305477 Tan05g2238 Tan-Chr5:73307977 4.90E-266 dispersed
Tan05g2238 Tan-Chr5:73307977 Tan09g1880 Tan-Chr9:70013523 2.50E-190 dispersed
Tan05g2237 Tan-Chr5:73305477 Tan05g2238 Tan-Chr5:73307977 6.90E-257 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67649 PF00069 Pkinase 9.00E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2238 - - - 0.0