Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2239 ATGAAAATGTCCCTTGAGCCAAACATCTTCTTCTTCATCTCCTTCATCGCATTTCAACTTTCGCCCTGTTTCAGCAACGACGCCGGCCTCGATTTATTTAAAGCTTGTGAGATGAGTTACAATTGTGGAAACTTGGTGAGTATCTCCTACCCCTTTTGGGGGAATGCGAGGCCGGATTTTTGTGGGTCGAGCAAATTCGAGCTCAAGTGCAACAACAACAAAACCACAACGATTAAGATCAATTCGTTGGATTATTACGTTCTGAACATCAACCAATCGGATCAAACAATGAGGATGGCAAGATCAGACCTGTTCGATGATTACTGCCCAAAAAGCAAAATCGAAACGGCGAAGTTGGATCCAAGTCAGTTTTCGTATACTGAGAAGGATCTGAATATATCGATCTGGTACGATTGCCCGATGCAAGAGGGGGTTCCGGAGGAGTTCAGATTCCGGTGCAGTGGGGAAGGGGAAAAGGGAAACACAAATAATTATGCTTTGGAACCGGAGGCGATGTATTTGAGTAGAAGTATCAGAGGGTGTAAAGTGAAAATGGAAGCGACAGTTTCGAAAAAGTCGTTTAAAGAAGGAGAAATGAACCGGACGACGCTGGTGGAGACGGCTCTGAGAGAAGGGTTCGAAGTGCAATATGCGGATGATTCAGGGTGCTACTTCTGCAAGGAAAATGGCGGCGCGTGTGGAGGAAACGCCACCCAAGATTATTACTGCATTTGTGAAAATGGAAATATAAATTCCTTCTCTTGCTCATCTCGTATTCATACTCCTGCTTCTGTTGGAATTGCCATAGGAAGCATCAATTTGATAATCTTCATCGTCATCCTTTCCATCCTCCTCCTCGTCCGCTGGAGAAAGAAAAAGAAACGCAACTCAAAGAAAGACGAAATTGAAGAAACTATAAAGAGATATTCCACACAAATACCAAAGCGGTATACTTACTCAGAGTTGAAGAAAATCACAGATTCCTTCAAGAACAAGCTTGGCCAAGGAGGATTTAGCATCGTCTACAAAGGAAAGCTACTAGATGGTCGTTATGTGGCCGTAAAACTTTTGAATGAATCCAGAGAAGATGCCCAAGATTTTATCAATGAAGTCGTAAGCATCACTAGAACTTCCCATGTAAATATAGTAACTTTCTTGGGTTTCTGCTACGAGGAGAACAAAAGAGCTTTGATTTATGAGTATATGCCTAAAGGGTCGTTGGACAAATACATATTTCAAAAAGGGCTACAAGAGAAAAATAAAGCTAAATTGAATTGGAACACACTCTATAGCATCATTGTGGGTGTGGCTCGAGGATTAGAGTACTTGCATCGTGGCTGCAACACAAGGATTTTGCATTTTGATATCAAGCCACACAACATTCTCTTGGACAATGAGTTCTGTCCCAAGATCTCAGACTTTGGACTTGCCAAGCAATGCAAGGCCAGAGAGAGTCATGTGTCCATGACATGTGCAAAGGGGACGATTGGGTTCATGGCCCCGGAAGTAATAATTAGAAGCTTTGGCAAAGTTTCTCACAAGTCGGATGTGTATAGCTATGGAATGTTGGTTCTTGAAATGGTTGGTGAAAGAAAGAGTCCTAATAAAGGAGAAAGCAGTGAAGAGTACTTTCCTGATTGGATATATAAAGATCTTGCCGGAAGTGAAATAGATAGAAATTGTAGGCAGTGGGGACAGACAGAGGAAGAAGAGGAAATGGTAAGAAAAATGGTTGTAGTGAGTTTGTATTGCATACAGACATTGCCGGACGACCGGCCGTCGATGACGGAGGTGGTGGCTATGTTAGAAGGGAGTGCTGATGGCTTACAGATTCCGCCCAAACCGGTCCTTTTTGAATCTCCTGCTGCTTCTTTGTCCTCATCCATCTCATATTTATGA 1899 42.76 MKMSLEPNIFFFISFIAFQLSPCFSNDAGLDLFKACEMSYNCGNLVSISYPFWGNARPDFCGSSKFELKCNNNKTTTIKINSLDYYVLNINQSDQTMRMARSDLFDDYCPKSKIETAKLDPSQFSYTEKDLNISIWYDCPMQEGVPEEFRFRCSGEGEKGNTNNYALEPEAMYLSRSIRGCKVKMEATVSKKSFKEGEMNRTTLVETALREGFEVQYADDSGCYFCKENGGACGGNATQDYYCICENGNINSFSCSSRIHTPASVGIAIGSINLIIFIVILSILLLVRWRKKKKRNSKKDEIEETIKRYSTQIPKRYTYSELKKITDSFKNKLGQGGFSIVYKGKLLDGRYVAVKLLNESREDAQDFINEVVSITRTSHVNIVTFLGFCYEENKRALIYEYMPKGSLDKYIFQKGLQEKNKAKLNWNTLYSIIVGVARGLEYLHRGCNTRILHFDIKPHNILLDNEFCPKISDFGLAKQCKARESHVSMTCAKGTIGFMAPEVIIRSFGKVSHKSDVYSYGMLVLEMVGERKSPNKGESSEEYFPDWIYKDLAGSEIDRNCRQWGQTEEEEEMVRKMVVVSLYCIQTLPDDRPSMTEVVAMLEGSADGLQIPPKPVLFESPAASLSSSISYL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73318519 73320698 + Tan0008256.1 Tan05g2239 753547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2239 632 FunFam S-receptor-like serine/threonine-protein kinase 293 401 - -
Tan05g2239 632 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Tan05g2239 632 Pfam Protein tyrosine and serine/threonine kinase 329 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2239 632 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247(InterPro)
Tan05g2239 632 FunFam PR5-like receptor kinase 402 614 - -
Tan05g2239 632 Gene3D Transferase(Phosphotransferase) domain 1 402 610 - -
Tan05g2239 632 ProSiteProfiles Protein kinase domain profile. 327 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2239 632 Gene3D Phosphorylase Kinase; domain 1 298 401 - -
Tan05g2239 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 213 622 IPR045874 GO:0004672(InterPro)
Tan05g2239 632 SMART serkin_6 327 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2239 632 SUPERFAMILY Protein kinase-like (PK-like) 307 603 IPR011009 -
Tan05g2239 632 Pfam Wall-associated receptor kinase C-terminal 162 247 IPR032872 -
Tan05g2239 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1950 Tan-Chr4:68124858 Tan05g2239 Tan-Chr5:73318519 9.20E-93 dispersed
Tan04g1954 Tan-Chr4:68267810 Tan05g2239 Tan-Chr5:73318519 5.80E-95 dispersed
Tan05g2239 Tan-Chr5:73318519 Tan05g2241 Tan-Chr5:73336661 3.20E-211 dispersed
Tan05g2239 Tan-Chr5:73318519 Tan05g2240 Tan-Chr5:73321544 1.50E-229 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67650 PF07714 PK_Tyr_Ser-Thr 5.90E-50 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2239 - - - 0.0