Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2240 ATGAAGCCCACCGTGTGCTTCAAGTTCTTCATTTCGTTGATCGCGTTTCACGTTTGGCCCTGTTTCAGCAAATTAGACGTCGGCGTCGACTTATTTAAAGCTTGTAAGGTCAGTTACAATTGCGGAAACTTGGTGAACATCTCGTATCCCTTTTGGGGGAACGAGAGGCCGGATTTTTGCGGGATGAGAGGATTCGAGCTCAATTGCATCGATGACCGAAGGACAACAATTGAAATCAACTCCTTTGTATATTACGTTCTGAACATCAGCCAACGGAATCTAATAATGAGAATCTCCAGATCTGACCTTTTCGATAATTTATGCCTTCAAAATCAAACTCAAAATCAAATCAAAACGGCGACGTTGGATTACAGTGGGTTCGAGTATACTGAGAACGATCAGAATATCTCGATCTGGTATGATTGCAGGGGGGAAGAGGGAATTCCGGAGGAGTTCAGATTTGGGTGCAACAGCAGCAGCAGCAACAGTATTGGGAGTGGGACATTAATGAATTATGCTTTGGAAGCGGAGGCCATGTATTTCAGTAAAAAATTGAGCGGCTGCAAAAACAATATCAACGCCACAGTCACGATGAAGGGGTGGGAAGAAGGAGGAGGAAAAAACCGAACCGGCCTGCTGGAGACGGCTCTCAGGCAAGGGTTCGAAGTGGGATACTCACCGGATTTCTATGGGTGTGGGCCCTGCAAGAAAAGTGGCGGCACGTGTGAAGGAAACGCCGTCCAATTTTATTGCATTTGTCCAACTGCAGATCTCAGCTACGTTTGCGGTTCTGGTTCTACTAGTATCATGGCTGATGGACCAGCACTAGAACCTTCTTCAGTCATATCTGTGGCTGATGGACCAACACTAGAACCTTCTCCATCCAGTTCTGGAAAGTCGAATTTACAGAGAAAAGTATCTATCACAGTCGCAATTGCTTTGGGAAGCATTATTATGATAATCTCCATCATCATCTCCATCTACTACACCAGAAAAAACATCTCAAACAGAGACAAAATTGATGAAATCATCAAGAGATATTCAACGCACACCCCCAAGCGATACAGTTACTCAAAGCTAAAGAAAATTACAGGTTCCTTCAGGAACAAGCTTGGCCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGTTATCGAATGGTCGCGAAGTAGCAGTGAAAGTTTTGAATGAATCCAAAGAGAACGACGGTCAAGATTTTATGAATGAAGTTGTTAGCATCACCAATACTGCACATGTAAACATAGCCACTCTCTTGGGTTTCTGCTATGAGCGGAATAAAAGAGCTTTGGTTTATGAGTACATGCCTAAAGGGTCATTGGATAAGTATATATTTCATAAAGGGCAACAGAAAAATGAAATGGAGTTAGATTGGAACACGCTCTACAACATAGTTATGGGCGTGGCTCGAGGCTTAGAGTACTTACATCGGGGCTGCAACACAAGGATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGACAATGAGTTGTGCCCAAAAATCTCAGACTTTGGGCTTGCCAAGCAATGCAAGGCTAGAGAAAGTCAAGTGTCAATGACAGGTGTAAAAGGAACACCAGGATTTATGGCACCCGAAGTAATATTTAGAAAATTTGGCAAAGTTTCCCACAAGTCTGATGTTTATAGTTTTGGAATGTTGGTTCTTGAAATGGTGGGTGAAAGAAAGAGTCCTAATGAAGGAGTGGGAGAGAGCAAAGAAGAATACTTTCCTGATTGGATATATAAGGATCTTGCAGAATTTGAAACAGATAGGAACTGTAGGCAATGGGGTGAGACAGAGGATGAAGAGGTAATAGCCAGAAAAATGGTTGTTGTGGGTTTATATTGCATTCAGACATTGCCAAACGACCGGCCGTCGATGACTGAGGTGGTAGTTATGTTGGAAGGGAATGTTGATGACTTACAGATTCCACCAAAACTGGCCCTGCTTGGACCTCCTGCCCCTGCTGCTGCTTCGTCTTCTTCTTCATCCACCTCATATTTATGA 2031 43.18 MKPTVCFKFFISLIAFHVWPCFSKLDVGVDLFKACKVSYNCGNLVNISYPFWGNERPDFCGMRGFELNCIDDRRTTIEINSFVYYVLNISQRNLIMRISRSDLFDNLCLQNQTQNQIKTATLDYSGFEYTENDQNISIWYDCRGEEGIPEEFRFGCNSSSSNSIGSGTLMNYALEAEAMYFSKKLSGCKNNINATVTMKGWEEGGGKNRTGLLETALRQGFEVGYSPDFYGCGPCKKSGGTCEGNAVQFYCICPTADLSYVCGSGSTSIMADGPALEPSSVISVADGPTLEPSPSSSGKSNLQRKVSITVAIALGSIIMIISIIISIYYTRKNISNRDKIDEIIKRYSTHTPKRYSYSKLKKITGSFRNKLGQGGFSTVYKGKLSNGREVAVKVLNESKENDGQDFMNEVVSITNTAHVNIATLLGFCYERNKRALVYEYMPKGSLDKYIFHKGQQKNEMELDWNTLYNIVMGVARGLEYLHRGCNTRILHFDIKPHNILLDNELCPKISDFGLAKQCKARESQVSMTGVKGTPGFMAPEVIFRKFGKVSHKSDVYSFGMLVLEMVGERKSPNEGVGESKEEYFPDWIYKDLAEFETDRNCRQWGETEDEEVIARKMVVVGLYCIQTLPNDRPSMTEVVVMLEGNVDDLQIPPKLALLGPPAPAAASSSSSSTSYL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73321544 73335626 + Tan0003577.1 Tan05g2240 753548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2240 676 Gene3D Phosphorylase Kinase; domain 1 338 440 - -
Tan05g2240 676 FunFam PR5-like receptor kinase 441 654 - -
Tan05g2240 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2240 676 ProSiteProfiles Protein kinase domain profile. 365 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2240 676 Pfam Wall-associated receptor kinase C-terminal 156 254 IPR032872 -
Tan05g2240 676 PANTHER RUST RESISTANCE KINASE LR10-RELATED 301 657 IPR045874 GO:0004672(InterPro)
Tan05g2240 676 Gene3D Transferase(Phosphotransferase) domain 1 441 651 - -
Tan05g2240 676 SMART serkin_6 365 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2240 676 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524(InterPro)
Tan05g2240 676 FunFam serine/threonine-protein kinase PBS1-like 333 440 - -
Tan05g2240 676 Pfam Protein tyrosine and serine/threonine kinase 367 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2240 676 SUPERFAMILY Protein kinase-like (PK-like) 342 643 IPR011009 -
Tan05g2240 676 Pfam Wall-associated receptor kinase galacturonan-binding 35 100 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2240 Tan-Chr5:73321544 Tan05g2244 Tan-Chr5:73349212 3.70E-213 dispersed
Tan05g2239 Tan-Chr5:73318519 Tan05g2240 Tan-Chr5:73321544 1.50E-229 tandem
Tan05g2240 Tan-Chr5:73321544 Tan05g2241 Tan-Chr5:73336661 6.80E-252 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67651 PF07714 PK_Tyr_Ser-Thr 3.90E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2240 - - - 0.0