Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2243 ATGAAAATCTTCCTAAACCCTATCATCAGTAACCTTTTCTTCATCTCCTTCATCGCGTTTCATCTTTCGACATGTTTTAGCAGAGACGACGTCGATTTATTCAAAGCCTGCGGTGTGAGTTACAATTGCGGAGAATTGGTAAACATCACGTATCCCTTCTGGGGGAACGAGAGGAAGAAGTTTTGTGGGCGGAAAGAATTCAAACTCAACTGCAAAAACAAACGAACCACCACAATTCAAATAAACTCGATGAAATATAACGTTCTGAAAATCAACCAGTCGAATAGTAGAATGAGGATCGCAAGATCAGACCTGTTCGATAATTACTGCCCACAAAATCAAATCCAAGTGGCGACGATGGATCGCCTTCACCATCCGTTCGTGTATTCTTCCAACAATCAGAACATCTCAGTGTGGTACAATTGCTCGGCGGAAAATGAAACTCAAATTCCGAAGACATACAACTTTTCGTGCAGTTGGGAAGCGGAAAGGGATGGGAGAATGAATTATGCTTTCGAACCGTCGGCGGCGACTTGGAATCCACAACTGGATGACTGTAAAATGAACATAAACGTGACAGTTACGATAGAGTGGTTGAAAGAAGGTATAAAGAACAGGACGAATCTGGTTGAGAATGCTGTGAAACGAGGATTCGAAGTGGATTACGGGAATTGGTATAAGGAAGCGTGTGATGAATGTAATGAAAGCAGAGGCAAATGTGGAGGAAACGAGACGTATCCATTTTTCTGCATTTGTCGAAACGGAGTCGCTAATCCTTACCTCTGTGAACCTGCCCCTTCCCCTGCCCCTGGACAACCTAATGATAAATGGAAGAAGGTCCTCATAGGCGTTGGATGTGGTATTGGAGGCATAATGATAACCAGTCTAATCTTTTATATACGGCTTCGTTTGCGCAAAAGGAAGCATCCTCATGCTTTCTCCTTTCTCCTTCAAACCAATTCTTGTGATCGTCCAACGAAGGAAGTCGAGAAAGGAGAAAGTTACATGGGCGCACCTCTCTTCTCTTATCACGAACTGGTACAAGCTACAGATAAATTTAACCCAGCCAACGAGCTTGGAGATGGTGGCTTTGGCACCGTCTACTATGGTAAACTTCGAGATGGGCGTGAGGTTGCAGTTAAACGATTGTTCCAAAATAACTACAGAAAAGTTGAGCATTTCAAGAATGAAGTTGAGATCCTTACTCGTTTGCGCCACCCACATCTAGTCACCCTTTACGGATGCACCTCTCGACGCTCCCGTGAACTCTTGTTGGTTTATGAATTCATTCCGAACGGTACTGTTGCTGATCATCTGCATGGAAACCAAGCAAAACCTGGCGAGCTTCCATGGCATACACGGTTGAAAATTGCCATAGAGACTGCAAGTGCTCTGGCTTTTCTCCATGCTTCTGAGACCATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAACAACTTCAGTGTTAAAGTTGCTGATTTTGGACTGTCTCGCCTTTTTCCTACGCAAGCCACCCATATTTCAACTGCTCCACAAGGAACTCCGGGCTATGTTGATCCAGAGTATCATGAATGTTATCAACTTACCAATAAAAGCGACGTATTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCACAAGGCATAGGCATGAGATTAACTTGTCGACAATGGCAATAAACAAGATCCAAAACAACGAATTACACGACTTCGTAGACCCATCACTCGGATTTAAAATAGATCAAAGAATCAGAGACATGATCTGTGCAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGGCCATCAATGTTGGAGGCTCTAGAAATTCTAAAGAATATAGAGAGTGGGAAGTTGTGGCAAAGGGAAGGGTGA 1917 43.56 MKIFLNPIISNLFFISFIAFHLSTCFSRDDVDLFKACGVSYNCGELVNITYPFWGNERKKFCGRKEFKLNCKNKRTTTIQINSMKYNVLKINQSNSRMRIARSDLFDNYCPQNQIQVATMDRLHHPFVYSSNNQNISVWYNCSAENETQIPKTYNFSCSWEAERDGRMNYAFEPSAATWNPQLDDCKMNINVTVTIEWLKEGIKNRTNLVENAVKRGFEVDYGNWYKEACDECNESRGKCGGNETYPFFCICRNGVANPYLCEPAPSPAPGQPNDKWKKVLIGVGCGIGGIMITSLIFYIRLRLRKRKHPHAFSFLLQTNSCDRPTKEVEKGESYMGAPLFSYHELVQATDKFNPANELGDGGFGTVYYGKLRDGREVAVKRLFQNNYRKVEHFKNEVEILTRLRHPHLVTLYGCTSRRSRELLLVYEFIPNGTVADHLHGNQAKPGELPWHTRLKIAIETASALAFLHASETIHRDVKTTNILLDNNFSVKVADFGLSRLFPTQATHISTAPQGTPGYVDPEYHECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNNELHDFVDPSLGFKIDQRIRDMICAVAELAFQCLQSVRDTRPSMLEALEILKNIESGKLWQREG 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73346163 73348536 + Tan0012437.1 Tan05g2243 753551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2243 638 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524(InterPro)
Tan05g2243 638 Gene3D Phosphorylase Kinase; domain 1 324 429 - -
Tan05g2243 638 Pfam Wall-associated receptor kinase C-terminal 169 254 IPR032872 -
Tan05g2243 638 Gene3D Transferase(Phosphotransferase) domain 1 430 636 - -
Tan05g2243 638 FunFam Wall-associated receptor kinase-like 20 430 637 - -
Tan05g2243 638 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2243 638 SUPERFAMILY Protein kinase-like (PK-like) 335 628 IPR011009 -
Tan05g2243 638 Pfam Wall-associated receptor kinase galacturonan-binding 42 102 IPR025287 GO:0030247(InterPro)
Tan05g2243 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 34 632 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Tan05g2243 638 SMART serkin_6 353 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2243 638 ProSiteProfiles Protein kinase domain profile. 353 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2237 Tan-Chr5:73305477 Tan05g2243 Tan-Chr5:73346163 2.40E-249 dispersed
Tan05g2243 Tan-Chr5:73346163 Tan09g1880 Tan-Chr9:70013523 1.90E-139 dispersed
Tan05g2243 Tan-Chr5:73346163 Tan05g2244 Tan-Chr5:73349212 1.90E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67654 PF00069 Pkinase 3.10E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2243 - - - 0.0