Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2244 ATGAAAATCTTCCTAAACCCAATCACGAGTAACCTTTTGATCTTCATCGCGTTTCATTTATGGCCATGTTTCAGCGAAGACGCCCTCGATCAATTCAAAGCTTGTGGTGTGAGATACAACTGCGGAGAATTGGTAAACATCACTTATCCCTTCTGGGGAAACGAGAGGCAGCGGCTTTGCGGGCGGCCAGAATTCGAGCTCAATTGCCAACACAACCGAACAACGACGATTAAAATCAATTCGACGGAATATAACGTTCTGGGAATCAACCAGCGGGATTATAGAATGACGATCACAAGATCACACCTGTTAGACAATATCTGCCTCAAGAACACAGATCGAAACGAAAATACAAGGACTCTGGATGAGCGGATGTTCATGTATTCTTGGAACAATAAGATCATACGGGTGTGGTACAATTGCTCGGCTAAAAAGGAAATTCCGGAGAGAAACAGATTCTGGTGCGGCTATGAAAACGTGGGGATAGAGAATTATGTTGTCGGACCTGGTTTTGAACTGAATAGGAGTGTATTAATGGAAGGTTGTCAAATGAGAATGAATGTGATGGTTAGAGTGGAGGAGGCGAATCAGGAAGAAGAAACAGAGCAGAACAGGACGGCGCTGCTAGAGAAGATCGTGCGACGAGGGTTCGACGTGGAATATGAAAAGGGAGATTCGATAGCGTGCAAGAGATGCAACGAAGCCGGCGGAAATTGTGGTGGCAACGCCACTTACCCATTTTACTGCATTTGTGCCGGCGAAGATGCAAATCCTTATGTCTGCAGATCTGCTCCTCGAACAGGGAAGTTGAAGAAAAAGTTAATCATAGTTGTAATTCCTGCAGGATGCATCCTTTTGATAATCTCCATCGTCATCTTCATCTACTACACATGGAAATACATCCTAAACAGAGACGAAGTCGAAGAAATTACAAAGAGACATTCTACAGAATTACCAAAGCGCTACAGTTACTCAAAGCTGAAGAAAATGACAGACTCGTTCAAGAACAAGCTTGGCCAAGGAGGATTTAGCACCGTCTACAAAGGAATGCTACAAGATGGTCGCGAAGTGGCGGTGAAAGTACTTTTGAATGAATCCAAAGAAAACAGCCAAGATTTTATGAATGAAGTTGTAAGTATAACCCAAACTTCCCATGTAAATATAGTCGCTCTTTTGGGATTCTGCTACGAGCGAAACAAGAGAGCTTTGATTTATGAGTATATGCCTAAAGGGTCATTGGAAAAGTATATATCCCACAAAGGGCTACAGCAAAACAAAGTGAAGTTGGATTGGAACACTCTCTATAGCATTGTTATGGGCATCGCTCGAGGCTTAGAATACATGCATCGTGGCTGCAATACAAGGATCTTGCATTTTGACATTAAACCACACAACATTCTTTTGGACAATGAGTTTTGTCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAGGAGCAAAGAGAGTCACGTGTCGATGACGGGTGTGAAAGGGACGATAGGATTCATGGCACCTGAAATAATGTTTAGAAATTTAGGTAAGGTTTCTCACAAGTCAGACGTTTATAGTTATGGAATGTTGGTTCTTGAGATGGTGGGGGAAAGAAAGAGCCCAAATGAAGGGGTGGGGGAGAAGAGTGAAGAGTATTTTCCTGATTGGATATATAAGAATCTTGCAGAAAGTGAAATAGATGAAGGCTGTCGTTGGGGCAACACAGAGGAAGAGGAAGAAATGGCTAGAAAAATGTTAATTGTGGGGTTGTGTTGTATTCGGACATTGCCAGAGGAAAGGCCATCTATGAGTAATGTAGTGTCGATGTTGGAAGGGCGTGTTGATGGCTTACAGATTCCACCAAAACAAGCCTTGTTTGGACCTGTTGCAGCTGCGGTGCCTTCATCTTCTTCTCCTTCCTCCACCTGGCATTTATCAGGCTGA 1938 43.34 MKIFLNPITSNLLIFIAFHLWPCFSEDALDQFKACGVRYNCGELVNITYPFWGNERQRLCGRPEFELNCQHNRTTTIKINSTEYNVLGINQRDYRMTITRSHLLDNICLKNTDRNENTRTLDERMFMYSWNNKIIRVWYNCSAKKEIPERNRFWCGYENVGIENYVVGPGFELNRSVLMEGCQMRMNVMVRVEEANQEEETEQNRTALLEKIVRRGFDVEYEKGDSIACKRCNEAGGNCGGNATYPFYCICAGEDANPYVCRSAPRTGKLKKKLIIVVIPAGCILLIISIVIFIYYTWKYILNRDEVEEITKRHSTELPKRYSYSKLKKMTDSFKNKLGQGGFSTVYKGMLQDGREVAVKVLLNESKENSQDFMNEVVSITQTSHVNIVALLGFCYERNKRALIYEYMPKGSLEKYISHKGLQQNKVKLDWNTLYSIVMGIARGLEYMHRGCNTRILHFDIKPHNILLDNEFCPKISDFGLAKQCRSKESHVSMTGVKGTIGFMAPEIMFRNLGKVSHKSDVYSYGMLVLEMVGERKSPNEGVGEKSEEYFPDWIYKNLAESEIDEGCRWGNTEEEEEMARKMLIVGLCCIRTLPEERPSMSNVVSMLEGRVDGLQIPPKQALFGPVAAAVPSSSSPSSTWHLSG 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73349212 73354974 + Tan0020511.1 Tan05g2244 753552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2244 645 SMART serkin_6 332 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2244 645 Pfam Wall-associated receptor kinase galacturonan-binding 40 100 IPR025287 GO:0030247(InterPro)
Tan05g2244 645 Gene3D Transferase(Phosphotransferase) domain 1 408 616 - -
Tan05g2244 645 Pfam Protein tyrosine and serine/threonine kinase 334 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2244 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 222 624 IPR045874 GO:0004672(InterPro)
Tan05g2244 645 ProSiteProfiles Protein kinase domain profile. 332 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2244 645 Gene3D Phosphorylase Kinase; domain 1 304 407 - -
Tan05g2244 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2244 645 Pfam Wall-associated receptor kinase C-terminal 175 253 IPR032872 -
Tan05g2244 645 SUPERFAMILY Protein kinase-like (PK-like) 313 609 IPR011009 -
Tan05g2244 645 FunFam Suppressor of npr1-1 constitutive 4 304 407 - -
Tan05g2244 645 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524(InterPro)
Tan05g2244 645 FunFam PR5-like receptor kinase 408 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2240 Tan-Chr5:73321544 Tan05g2244 Tan-Chr5:73349212 3.70E-213 dispersed
Tan05g2241 Tan-Chr5:73336661 Tan05g2244 Tan-Chr5:73349212 1.00E-199 dispersed
Tan05g2242 Tan-Chr5:73341188 Tan05g2244 Tan-Chr5:73349212 6.00E-195 dispersed
Tan05g2244 Tan-Chr5:73349212 Tan05g2249 Tan-Chr5:73410302 2.20E-167 dispersed
Tan05g2243 Tan-Chr5:73346163 Tan05g2244 Tan-Chr5:73349212 1.90E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67655 PF07714 PK_Tyr_Ser-Thr 1.10E-50 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2244 - - - 0.0