Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2249 ATGGATTCCAGATTGTTTCCATTTCCCTTTTTGCACCCTTCTTTAGCTTTCATGCTTCTCGTTCTGCTCAATCCTCGAACTACGTCCTCTGCTTATGAAGAATGGTTCTTAAACTGCAAAGATTCGTTGAACTGCGAGAGCATCAGTACGATGGAATTCCCTCTCTGGAAATCCAACGGAGCAGAAAATTGTGGTCATCCTGAGCCAATGAAGCTCAATTGCGAGGGAAGCCGCCGCACAACCATAGAAATTTTCGAAGCAAAATTCGAACTCCTGGGTTTCAGTTCGAAAGATCAAATTATCATAATAGCTGAAATCGACTTTTCAGATCAATTTTGTTGGGGAGATCACAAGAATTCATCCATTTCCATCTACGCGATCATTCCTGTTTCTTACGATTGCCGACATTCTCAAAGTCAAATTCCAGACAGAGCAAATTGCTTCGGAACTAAATTTAGCTACTTACCATTTGAAAACACGACCGGCGGTAATAATGGTGATGCATTTTGTGTGTTGAGTGCAGTAGTGCCGATTTCACCATCATGGTTTTTGCATTGTAGAAACTGCAGTGTTTATGGTGGGTTTTGTGGTTATGATTTGTTTGTGAATCAAACAAGATGCTACTGCCAATCGCCCTCTCATGGATTTGGGATCTGTCCTTCCTCACTCATTGCAGCAACTCATCCACCCGGATCCGTTTTTTTTTCTTTTTCTTTTTCTTTTTTTTTAATTCTAAGGAAAGTGATTTTGCTGCTAGGTACAATTGCTTTAGGAAGCATAATTTTGATAATCTCTATCATCGTCTTCATCTACAACAACAGGAAAAGAAGCTCAAACAAAGACGAAATTGAAGAAACTATAAGGAAATATTCCAAACAAACACCCAAGCGATACAGTTACTCAAAGTTGAAAAAAATGACAGATTCGTTCAAAGACAAGCTTGGCCAAGGAGGATTCAGCACTGTCTACAAAGGAAAGCTATCAGATGGTCGCCAAGTGGCGGTAAAACTTTTGAATGAATCCAATGAAAACGGTCAAGAATTTATAAATGAAGTTGTAAGCATCACCGGAACTTCGCATGTAAATATAGCCACTCTCTTGGGTTTCTGCTATGAGCGGAATAAAAGAGCTTTGATTTACGAGTATATGCCAAAAGGGTCATTGGATAAGTACATATTTCACAGATCAGGACTGCAGAAAAATGATGTGGAGTTGGATTGGAGCACACTTTATAGCATCATTATGGGTGTGGGTCGAGGCTTAGAATACTTGCATCGTGGCTGCAACACAAGGATTCTGCATTTTGACATTAAACCACACAACATTCTTTTGGATAATAATTTCTGCCCCAAGATTTCAGACTTTGGGCTTGCCAAGCAATGCAAAGAGAGTCATGTATCGATGACGGGAGTGAAGGGGACGGTAGGATTCATAGCACCAGAAGTAATATTTAAGAACTTAGGTAAGGTATCGCACAAGTCTGATGTTTATAGCTATGGAATGTTGATTCTTGAAATGGTGGGAGAAAGAAAGAGATCACCGAATGAAGGAGGAGAAATAGATGAGTACTTTCCGGATTGGATATATAAGGATCTTGCAGTTGCAGGGAGTGAAATAGGTGGAGGCTGCAAGTGGGGAAATACAGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGTTTGTGTTGCATTCAGACATTGCCAGAGGAGAGGCCGTCGATGAGTGATGTAGTGGGGATGTTGGAAGGGAGCGTTGATGGCTTACAGATTCCGCCAAAACCGACCATGTTTGCACCTCCTGCGGCTGCTCTGCCCCAACTTTCTTCTTCTTCTTCTTCATCCACCTCGTATTTATGA 1863 41.01 MDSRLFPFPFLHPSLAFMLLVLLNPRTTSSAYEEWFLNCKDSLNCESISTMEFPLWKSNGAENCGHPEPMKLNCEGSRRTTIEIFEAKFELLGFSSKDQIIIIAEIDFSDQFCWGDHKNSSISIYAIIPVSYDCRHSQSQIPDRANCFGTKFSYLPFENTTGGNNGDAFCVLSAVVPISPSWFLHCRNCSVYGGFCGYDLFVNQTRCYCQSPSHGFGICPSSLIAATHPPGSVFFSFSFSFFLILRKVILLLGTIALGSIILIISIIVFIYNNRKRSSNKDEIEETIRKYSKQTPKRYSYSKLKKMTDSFKDKLGQGGFSTVYKGKLSDGRQVAVKLLNESNENGQEFINEVVSITGTSHVNIATLLGFCYERNKRALIYEYMPKGSLDKYIFHRSGLQKNDVELDWSTLYSIIMGVGRGLEYLHRGCNTRILHFDIKPHNILLDNNFCPKISDFGLAKQCKESHVSMTGVKGTVGFIAPEVIFKNLGKVSHKSDVYSYGMLILEMVGERKRSPNEGGEIDEYFPDWIYKDLAVAGSEIGGGCKWGNTEEEEEMARKMIIVGLCCIQTLPEERPSMSDVVGMLEGSVDGLQIPPKPTMFAPPAAALPQLSSSSSSSTSYL 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73410302 73413276 + Tan0002963.1 Tan05g2249 753557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2249 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2249 620 SUPERFAMILY Protein kinase-like (PK-like) 288 583 IPR011009 -
Tan05g2249 620 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524(InterPro)
Tan05g2249 620 PANTHER RUST RESISTANCE KINASE LR10-RELATED 248 601 IPR045874 GO:0004672(InterPro)
Tan05g2249 620 Pfam Protein kinase domain 311 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2249 620 Gene3D Transferase(Phosphotransferase) domain 1 383 591 - -
Tan05g2249 620 FunFam serine/threonine-protein kinase PBS1-like 275 382 - -
Tan05g2249 620 ProSiteProfiles Protein kinase domain profile. 308 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2249 620 SMART serkin_6 308 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2249 620 Gene3D Phosphorylase Kinase; domain 1 279 382 - -
Tan05g2249 620 FunFam PR5-like receptor kinase 383 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2244 Tan-Chr5:73349212 Tan05g2249 Tan-Chr5:73410302 2.20E-167 dispersed
Tan05g2249 Tan-Chr5:73410302 Tan11g1728 Tan-Chr11:17362786 1.60E-61 dispersed
Tan05g2248 Tan-Chr5:73399194 Tan05g2249 Tan-Chr5:73410302 3.20E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67657 PF00069 Pkinase 2.50E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2249 - - - 0.0