Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2267 ATGGCTGAGTTCACTGCAAACTTTCAAAGCTTAAAGCCCTCATCTTTTCCACTAATGGAAATGGATTCCAACCAAAATCCAAGTCTACTTCATAACCCAAATGTCAATTTTCTTGACAACATTCCTGTTTTGTTCAATGACAGTTTCTTTGGCAATCAAGCTGCTCCTCCCAGATTCCTGGAAAATTGGGGAGAAAATCTCCCAGAAATTTTCTCTCAATCCAATCAGATTACTGCACCTGTCTTTGAGCCTGCAAATCCATCTGGAAATGACCTCCATGGAAGCAAAAAAAGAAAGCTTGAAACTGATGCTTCTGAAAGCAGCTCTGGCAATTCAACTCCTCAGATTTCTGAAACTGGGATCAACACTAAAAATAGCTCTGGAAAAGAAAAGCGGCCGAAAAAAGGCAGCGAAAACGACGGCGAGAAGCCGAGGGAAGTGGTTCATGTTCGAGCCAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCTGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGTTCCTATTATGACTTCAACTCAGACTCAGATGCTGTACACAAACTGAAGGCAAAGGAAATGAGAGAGGGAAATGGAGGATTGTTGGTTGGATCAACTCAACTTGGTCCCTTTGATTTGAGCTTTGGTTCTTATTCCACATTGCCATTCAACAGCATATGA 822 41.24 MAEFTANFQSLKPSSFPLMEMDSNQNPSLLHNPNVNFLDNIPVLFNDSFFGNQAAPPRFLENWGENLPEIFSQSNQITAPVFEPANPSGNDLHGSKKRKLETDASESSSGNSTPQISETGINTKNSSGKEKRPKKGSENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDAVHKLKAKEMREGNGGLLVGSTQLGPFDLSFGSYSTLPFNSI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73960172 73961777 + Tan0010040.1 Tan05g2267 753575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2267 273 MobiDBLite consensus disorder prediction 125 163 - -
Tan05g2267 273 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983(InterPro)
Tan05g2267 273 CDD bHLH_AtBPE_like 146 231 - -
Tan05g2267 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 224 IPR036638 GO:0046983(InterPro)
Tan05g2267 273 Gene3D - 153 224 IPR036638 GO:0046983(InterPro)
Tan05g2267 273 SMART finulus 162 212 IPR011598 GO:0046983(InterPro)
Tan05g2267 273 MobiDBLite consensus disorder prediction 105 124 - -
Tan05g2267 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983(InterPro)
Tan05g2267 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan05g2267 273 FunFam transcription factor BEE 3-like 153 224 - -
Tan05g2267 273 MobiDBLite consensus disorder prediction 80 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2023 Tan-Chr4:72351644 Tan05g2267 Tan-Chr5:73960172 4.80E-33 dispersed
Tan05g2267 Tan-Chr5:73960172 Tan06g1211 Tan-Chr6:12663433 2.00E-29 dispersed
Tan05g2267 Tan-Chr5:73960172 Tan05g2268 Tan-Chr5:73960172 2.50E-104 tandem
Tan11g1862 Tan-Chr11:23161454 Tan05g2267 Tan-Chr5:73960172 3.80E-29 transposed
Tan05g2267 Tan-Chr5:73960172 Tan09g1896 Tan-Chr9:70106179 2.70E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27555 PF00010 HLH 5.30E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2267 - - - 0.0