Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2268 ATGGCTGAGTTCACTGCAAACTTTCAAAGCTTAAAGCCCTCATCTTTTCCACTAATGGAAATGGATTCCAACCAAAATCCAAGTCTACTTCATAACCCAAATGTCAATTTTCTTGACAACATTCCTGTTTTGTTCAATGACAGTTTCTTTGGCAATCAAGCTGCTCCTCCCAGATTCCTGGAAAATTGGGGAGAAAATCTCCCAGAAATTTTCTCTCAATCCAATCAGATTACTGCACCTGTCTTTGAGCCTGCAAATCCATCTGGAAATGACCTCCATGGAAGCAAAAAAAGAAAGCTTGAAACTGATGCTTCTGAAAGCAGCTCTGGCAATTCAACTCCTCAGATTTCTGAAACTGGGATCAACACTAAAAATAGCTCTGGAAAAGAAAAGCGGCCGAAAAAAGGCAGCGAAAACGACGGCGAGAAGCCGAGGGAAGTGGTTCATGTTCGAGCCAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCTGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGGTAATGAAAATTGAAGTTGTTTGTGAAAAACAAACAACCTTAAATGAAAACAAAGACAATTTTTCTTAA 633 39.97 MAEFTANFQSLKPSSFPLMEMDSNQNPSLLHNPNVNFLDNIPVLFNDSFFGNQAAPPRFLENWGENLPEIFSQSNQITAPVFEPANPSGNDLHGSKKRKLETDASESSSGNSTPQISETGINTKNSSGKEKRPKKGSENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKVMKIEVVCEKQTTLNENKDNFS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 73960172 73961777 + Tan0010040.2 Tan05g2268 753576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2268 210 Gene3D - 147 205 IPR036638 GO:0046983(InterPro)
Tan05g2268 210 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 190 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan05g2268 210 Pfam Helix-loop-helix DNA-binding domain 160 187 IPR011598 GO:0046983(InterPro)
Tan05g2268 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 192 IPR036638 GO:0046983(InterPro)
Tan05g2268 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 210 IPR011598 GO:0046983(InterPro)
Tan05g2268 210 MobiDBLite consensus disorder prediction 125 164 - -
Tan05g2268 210 MobiDBLite consensus disorder prediction 105 124 - -
Tan05g2268 210 MobiDBLite consensus disorder prediction 80 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2268 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2268 Tan-Chr5:73960172 Tan09g1896 Tan-Chr9:70106179 4.70E-34 dispersed
Tan05g2267 Tan-Chr5:73960172 Tan05g2268 Tan-Chr5:73960172 2.50E-104 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g314 Blo04g00825 . Bda06g00808 Bda15g00661 Bpe12g00693 . . . Cmo13g01064 Cmo18g00036 Cma10g00230 Cma11g00279 Car10g00215 Car11g00253 . Cpe20g00122 Cpe04g01400 . . . . . . . Cla06g01463 Cam06g1615 Cec06g1678 Cco06g1671 Clacu06g1579 Cmu06g1531 Cre06g2342 . . Cone13ag0303 . Lsi02g00182 Csa01g00665 Chy12g01438 Cme12g01876 Blo13g00169 Blo15g00068 . . Bpe07g01037 Bpe15g00525 . Bma08g00060 Sed08g2182 Cmo10g00243 Cmo11g00282 Cma13g01023 Cma18g00043 Car13g00858 Car18g00037 Cpe09g01137 Cpe18g00762 Bhi08g01233 Tan05g2268 Cmetu12g1509 Lac10g0238 Hepe07g2392 . . Cla04g01092 Cam04g1143 Cec01g1653 Cco01g1702 Clacu04g1171 Cmu04g1152 Cre01g1447 Lsi06g01326 Csa01g00391 Chy02g02357 Cme02g01735
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001476 1 3 3 1 3 2 4 2 2 2 3 2 4 2 2 4 2 1 4 2 2 2 2 2 2 2 2 3 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27556 PF00010 HLH 0.00016 No_clan Tan TF