Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2280 ATGGCTCGGATCTTTGAGTATTTCGTGGTTTGTGGGATCGGACCGGAGATTCGGACTTTAGATGGAAACAAGGGATTCCATGGATTCAGTTACATGTATCTCCCGTCTCTTCTCGATCAGTATCCTCCTTCGAACCATTCTCTTTATCCTCCTCCACCACCTCAGCTCCCAACGTGTGTTCTACCAGCTGGGATCGAGTTTTTCTCATCGGGCTTCGATTCCACGGACGCCTGCACGTTTCCGCGGAGTTATCCGATTGTTTTGACGGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGGGACCCTGTTAGTGAGGACATTGCTGAAGCTTACCGCATTGCACCAAATTCGTATGCGGATAAATGTATCTGTATTGTTTCGCGTTCACCCAGCTTCAGCGTCCTTAAAGATGCCCTGGAGGAATTATTTGCTTTGTGCTTCTCCAGCAGTGGAAGTAGCAAGCCTCTGTGGGAAATCATAGCATACTTGGTCTCCAATGTACCTCTGCCTACTCCGGGAAAGGATCGGATTTTGTTTGGTATTGAGAATTGCCTTCTTTCTGTTCAGGCTCCACCAAAGGATGGGCTTCCCCATGCTGATATTTCGTTTCAACCACTTATGCAGTGCTTGGATTTGGAAAATGTAATCAAACTTTTCACTGCTGTCTTGCTGGAAAGGAGGATTCTTCTTCGATCAAACAAATATTCACTCTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCTACACCATATATGATGGGTCTTCATTCAGGCGTTGATACATCCTACCTGGCAATGGATGGTGTTGTCGTAGTGGACCTTGAGTATAATTGTATCACAACTTCTGAGGAAATACCACCTATTCCAGAACCAGAACTAGGATCTTTGCGTGGTGAGCTAATGAAGTTATTATATCCCAATGTTGTCAGCATAGATCAATTGAGGTCTGATTTGCGTAGCTCATCTGAGCAGTACCCTAGAGGTAACAGCAAGCCTTGGGGAGAAAACCAAGACCTTCAGCTTAGGTTGATATTTTTAAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAGTGCGAATGATGTCTTCAATACACAAGCATTCTTGAAGAAACGTTCACGATCAACTAATCAACCAGAAGATCCCATGATAACTCAGTTCCTGGAGTCCCATGGGTTCTTAGACTATCTAGAGAGATGCATAGGTTCTGATGAAAGTAATAACAATATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTTCCGTCCTCATTGGTCGAACCTGAGATCGTAACAATATCTGACCCTGATATGGGAACATCAGGTTCTGGTGCCAAGTACACTTATGATAGATTTCCTTCAAACATCAGAACTGAGGAGCAGGAAGAAAAGAGAAAGCAAATTCTAGCAGCAGCGAGTGGAGCTTTTGAATACTCAGGAAAGCATAATCCCAATTCACCTTCCATGCTGATGGGCAAGGATTCAAAAACACAAAGCCTCAGTCCAATGGAGAGGGCTGCTGAACGAGACCGCATGGTTTTGGACATAAAAGTCAAACTACAGGGTCTCTGGCTACGTCTTCTGAAACTGGGTGCAACCGATGATCCACTTTCTTCTTTTGAATATGGCACTATTCTTGCTTTGATTGAATCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGTATTAGAGAGCACATAAATACAGGATGGCTTTGTCAGTTAACCGATGAACAATTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGCCGAGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATGTACAAAAAGGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAATTAAGGTTTTGGGAAGGTTATTTTGACTATCTAATGGAACGGTCTTCAAATAAATCCGCCAATTATGCATCTCTGGTTTCTGCACAGCTAGTTGTTATGGCATCGCATATGGCTGGGCTTGGGCTTCCTGACACTGATGCTTGGTACATGATTGAGACAATTGCGGAGAAAAACAGCATTGGATACAAGCAACTCATAAAGCTCCGAGGTTTCTTGTCCCACATCCAGCAGCTACGCATTAGTTATTGGGGACTCTCTTCTATTAAGTCCCAATCCATATCTGCTCATGCATTGTCATCTCCACGTCACAAAGATGGATCTGATCAGAATCAGCAACCTGCCGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGATACATCTGCAAGGATTAACTATTTGGGTCGTAGCGGCCGTTGGTCATCTGATGCCACGAGTGAGAGTGGTACTCCTCAAAGACAAGATGTACCCTCAGCTGGGCAGAAAAAAGTTCAAAGTAATATTCGAGTTCTTAGGGGTCATAGTGGAGCTGTGACAGCACTCCATTGTGTTACGAAAAGAGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTCTTCATTAGTGGAAGCACAGACTGCTTGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAACTGCGAGCATCTTTAAAGGGTCACACAGGACCTGTTCGGGCTATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCAGTCGGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGTTGCGTGCGTATGCTATCAGGTGAACGTGTCCTTACAGCAGCGCATGATGGAACTGTGAAGATGTGGGATGTTAGAACTGATACTTGTGTAGCAACTGTTGGTCGTTGCTCTAGTTCAGTTTTATGCATGGAATATGATGACTCTACAGGAATACTGGCTGCTGGTGGTAGAGATACAGTAGCAAATATCTGGGACATCCGGGCTGGCCGGCAAATGCACAAGCTTTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACCATAATTACTGGTAGTGACGATTGGACCGCTAGATTGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTAGCATGCCACGCTGGCCCAATATTGGCCGTCGAGTATTCTACATTGGATAAAGGAATAATAACTGGTTCAACTGATGGGCTTCTCCGTTTATGGGAAAACGAGGATGGAGGTATTAGATGTGTGAAGAATGTCACTATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGTGCGGCAGATAACTCTATGTCCCTCTTTCATCGGCCACAAGAGAGACTCGGTGGCTTCTCGAACACAGGTGCAAAAATGTCTGGGTGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGCGCGGCTTCAGACCTCGAAAGGAAAAGAATATGCACAGGTGGTCGTAATGGCCTTCTGAGGCTCTGGGAGGCAACAATCAACATCTGA 3636 44.31 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSYMYLPSLLDQYPPSNHSLYPPPPPQLPTCVLPAGIEFFSSGFDSTDACTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRIAPNSYADKCICIVSRSPSFSVLKDALEELFALCFSSSGSSKPLWEIIAYLVSNVPLPTPGKDRILFGIENCLLSVQAPPKDGLPHADISFQPLMQCLDLENVIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTSEEIPPIPEPELGSLRGELMKLLYPNVVSIDQLRSDLRSSSEQYPRGNSKPWGENQDLQLRLIFLKFFASLLSGYRNFIENSANDVFNTQAFLKKRSRSTNQPEDPMITQFLESHGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPSSLVEPEIVTISDPDMGTSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSMLMGKDSKTQSLSPMERAAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEMYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMERSSNKSANYASLVSAQLVVMASHMAGLGLPDTDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSSIKSQSISAHALSSPRHKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARINYLGRSGRWSSDATSESGTPQRQDVPSAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRASLKGHTGPVRAINSDRGKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSSVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIITGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRLWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMSGWQLYRTPQKTAAMVRCAASDLERKRICTGGRNGLLRLWEATINI 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 74147803 74165688 + Tan0009130.1 Tan05g2280 753588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2280 1211 SMART dDENN_cls 366 434 IPR005112 -
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats profile. 1035 1074 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Pfam uDENN domain 35 103 IPR005113 -
Tan05g2280 1211 CDD WD40 852 1148 - -
Tan05g2280 1211 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 27 1204 IPR051696 GO:0031410(PANTHER)|GO:0032483(PANTHER)
Tan05g2280 1211 PRINTS G protein beta WD-40 repeat signature 929 943 IPR020472 -
Tan05g2280 1211 PRINTS G protein beta WD-40 repeat signature 1094 1108 IPR020472 -
Tan05g2280 1211 PRINTS G protein beta WD-40 repeat signature 970 984 IPR020472 -
Tan05g2280 1211 SMART uDENN_cls 1 104 IPR005113 -
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats profile. 997 1034 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Gene3D - 981 1156 IPR015943 GO:0005515(InterPro)
Tan05g2280 1211 FunFam DENN domain and WD repeat-containing protein SCD1 1 175 - -
Tan05g2280 1211 FunFam DENN domain and WD repeat-containing protein SCD1 805 1033 - -
Tan05g2280 1211 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Tan05g2280 1211 MobiDBLite consensus disorder prediction 520 538 - -
Tan05g2280 1211 Pfam WD domain, G-beta repeat 988 1025 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Pfam WD domain, G-beta repeat 1030 1065 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Pfam WD domain, G-beta repeat 908 942 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Pfam WD domain, G-beta repeat 948 983 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Pfam WD domain, G-beta repeat 1069 1106 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Pfam WD domain, G-beta repeat 852 900 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 MobiDBLite consensus disorder prediction 823 849 - -
Tan05g2280 1211 SMART DENN_cls 122 306 IPR001194 -
Tan05g2280 1211 FunFam DENN domain and WD repeat-containing protein SCD1 1034 1211 - -
Tan05g2280 1211 FunFam DENN domain and WD repeat-containing protein SCD1 202 387 - -
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1075 1107 - -
Tan05g2280 1211 ProSiteProfiles Tripartite DENN domain profile. 19 442 IPR037516 -
Tan05g2280 1211 MobiDBLite consensus disorder prediction 776 796 - -
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 952 986 - -
Tan05g2280 1211 MobiDBLite consensus disorder prediction 518 538 - -
Tan05g2280 1211 ProSitePatterns Trp-Asp (WD) repeats signature. 970 984 IPR019775 -
Tan05g2280 1211 Gene3D - 202 387 IPR043153 -
Tan05g2280 1211 Gene3D - 829 980 IPR015943 GO:0005515(InterPro)
Tan05g2280 1211 SUPERFAMILY WD40 repeat-like 853 1206 IPR036322 GO:0005515(InterPro)
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 942 - -
Tan05g2280 1211 ProSitePatterns Trp-Asp (WD) repeats signature. 1012 1026 IPR019775 -
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats profile. 952 992 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 951 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 ProSiteProfiles Trp-Asp (WD) repeats profile. 1075 1107 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 1112 1149 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 986 1025 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 1028 1065 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 905 942 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 945 983 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 1068 1107 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 849 900 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 SMART WD40_4 1167 1206 IPR001680 GO:0005515(InterPro)
Tan05g2280 1211 Gene3D - 1 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2280 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1434 Tan-Chr5:23426631 Tan05g2280 Tan-Chr5:74147803 2.10E-06 dispersed
Tan05g2280 Tan-Chr5:74147803 Tan09g1112 Tan-Chr9:63432754 2.30E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30