Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2334 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAAAACAAGATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCTGGTTTGCTAAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAATACTCCACTGATTCTTGCATGGAGAAAATCCTTGAGCGTTATGAAAGGTACTCATATGCAGAAAGGAGACTTGTTGCAAGTGAGAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTGAAAGCCAGAATAGAAGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGTCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAACATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTTCAGGAGCAAAACAACATGTTAGCCAAGAAGATAAGAGAGAAGGAGAAAGCACAAGCTCAAAATCCACCATTGCAACAGCAGCAGCAACAACATCAACAGCAACAGCAGCAGAATAGCCATGGCATTGAATCTTCCCCACTTCTCCTACCTCAGCCATTCCAATCTCTTAACATGACTTGTCCTTACCCGTCCCACGACGCTGGAGACGAAGACGCCGCCATCAACCACGACAGATCCGGTGCCCTCCTGCCGCCGTGGATGCTCCGCCACCACCTTGGTGACTAA 768 43.88 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVASENQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIREKEKAQAQNPPLQQQQQQHQQQQQQNSHGIESSPLLLPQPFQSLNMTCPYPSHDAGDEDAAINHDRSGALLPPWMLRHHLGD 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 74774199 74781627 - Tan0008510.1 Tan05g2334 753642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2334 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 Coils Coil 151 181 - -
Tan05g2334 255 MobiDBLite consensus disorder prediction 174 233 - -
Tan05g2334 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g2334 255 MobiDBLite consensus disorder prediction 180 222 - -
Tan05g2334 255 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Tan05g2334 255 Pfam K-box region 83 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2334 255 Coils Coil 122 145 - -
Tan05g2334 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan05g2334 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2334 255 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2334 255 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2291 Tan-Chr2:91795402 Tan05g2334 Tan-Chr5:74774199 1.10E-68 dispersed
Tan04g1891 Tan-Chr4:61746142 Tan05g2334 Tan-Chr5:74774199 1.20E-33 dispersed
Tan05g2334 Tan-Chr5:74774199 Tan06g2137 Tan-Chr6:70791271 1.20E-42 dispersed
Tan05g2334 Tan-Chr5:74774199 Tan05g2335 Tan-Chr5:74790061 5.20E-43 tandem
Tan01g4979 Tan-Chr1:115574713 Tan05g2334 Tan-Chr5:74774199 1.40E-23 transposed
Tan03g2853 Tan-Chr3:81550628 Tan05g2334 Tan-Chr5:74774199 1.50E-27 transposed
Tan04g1890 Tan-Chr4:61746142 Tan05g2334 Tan-Chr5:74774199 1.20E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27567 PF01486 K-box 4.30E-30 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2334 K09264 - csv:101207225 390.193