Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2335 ATGGGAAGAGGGAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAGGTGACTTTTGCCAAGAGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAACTCTTTGAGTTTTGTAGTGGCTCTAGCATGACCAAGACACTCGAGAAATATCGAAGGTGTAGTTATGGTATACTAGATGCTTCCCGCCAAGTAAACGACAATTGGCCACAGAACTTTGATGATTACTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAGAGAAACCTTTTGGGGGAAGATTTAGGGCCATTGAATACCAAGGAACTTGAACAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGACCAGCTTGCAGAACTTCAACACAAGGAACATATGCTTGTTGAAGACAACCGAGGTTTAAGAAAGAAGCTGGAAGAAAGCAGCGCACAAGCGGCGGTGGCGGCGGCGGCGGCATGGGGCTGGGAAGGCGGCGCCGGAGGGCCGAGCATGGAGTATCCCATTCCCAGCCGCATTGCTTCACAACCAGAAGCCTTTTTCCACCCCATAATTCAACCCACTTTACAAATTGGGTACAATTCTGTTGGCTCAGTTGGATTGAATAATAATAATAATAATAATAATAATAATCATAATAAAAATGTTGGACCTTCATCCCAAAATGCCAATGGATTATTTCATCTTGGCAGTTGGATGCTTTAA 804 42.79 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGILDASRQVNDNWPQNFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKEHMLVEDNRGLRKKLEESSAQAAVAAAAAWGWEGGAGGPSMEYPIPSRIASQPEAFFHPIIQPTLQIGYNSVGSVGLNNNNNNNNNNHNKNVGPSSQNANGLFHLGSWML 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 74790061 74796193 - Tan0012969.1 Tan05g2335 753643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2335 267 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan05g2335 267 Pfam K-box region 93 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2335 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g2335 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 MobiDBLite consensus disorder prediction 235 255 - -
Tan05g2335 267 FunFam MADS-box transcription factor 1 13 86 - -
Tan05g2335 267 Gene3D - 13 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 Coils Coil 125 145 - -
Tan05g2335 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2335 267 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2335 Tan-Chr5:74790061 Tan06g1512 Tan-Chr6:20976690 1.20E-61 dispersed
Tan05g2334 Tan-Chr5:74774199 Tan05g2335 Tan-Chr5:74790061 5.20E-43 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27568 PF01486 K-box 2.10E-25 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2335 K09264 - csv:101204197 384.415