Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2342 ATGCAATATATAAGGCTTGCTTTTGAGGCTTTGGATCATGTAATTCAAACCCAATATTTTGTGTTAGTGGGGAAAAAAAAAGTCTCTTCCACATTTGGAAAATGGTTTCAGATAAACACATGCTTAACTGTCTCAATCACTTTCTTTATATTTATGATTTCTCTGGCAGCTGCATACGACTCGTTGGACCCGAATGGAAACATCGAAATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGTGGCAACAGTGACGATAACCAACTTTCAGATGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTTTGGGCGAAGAAAGAGATCATCTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTAGAGAGACTATCCCACATAGTTGCAGAAGAGATCCAACAGTAGTAGACTTGCTTCCTGGTGTTCCTTATAACAAACAGGTCGATGGGTGTTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTAACTGTTGGTCATTCTGGTAGTTCAAATAAAACAGTGGCACTTCCCAAGAATTTCACCTTGTATGCTCCGGGCCTAGGCTACACGTGCGGCCAGGCAACGATTGCTCCGACATCAGCTTTCTACTCATCTGATAGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCACTTACTCACAGTTTCTTGCTTCCAAAACGCCAACTTGCTGTGTCTCCATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTCAAGCATGTGCTTGTGGCTGTCAAGACAGTACGACATGTATCCTAACCGAATTGGATCTTCAAAGCGTTACGGGATTGAATGAACCTACAAATGATAATACTCCATTGTTGCAGTGCACGAGACATAACTGCCCAATTCAAGTTCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTGAAGATAACTATCACCAATCTCAACTATCAACTTAACTATTCACAATGGACTCTTGTTGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCTAAGAATGACACAGCTCTGTTTCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATCGTCTTTCAGAAGGATTCAACATTTACATTCAAACAGGGTTGGGCTTTCCCTCGAAACGTTTATTTTGATGGAGATGAATGTAAGCAGAATGGAGAATCATCAACCAGTGAATCGAAAATCCCAAATGCCAAAATTCGAGAGAGCAAGCAGTATAAGCAAAAAAACAAAGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGGAAGCTTTACAGACAAGCTGCAAGTGCTGCCGCTTCTGCTACAATGACGCCTCTGAATGTTGATGCCCCGCCTAATAAGCTTTTGGAGCTCGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCGGCTTCTGTATTATGCGAATTTGGTTCATCAGTGCCCACTACACAGGCCTCTCGTGCTTCTGCAATGGACTTCAGCGCTGTGCAGGATACAAAAGGTTCCTCGAAGAGTTTTCCGAAGCACGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCCGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGAACATTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTATTCTTATATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCCATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTTTATCTGCAAATGTTCCGGAAATAGGAACTAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACGGGTAGTATGTATGTCACTGCTTCGAAAGACGGTGCAATTCGTTTATGGGATGGCATTAGTGCAAAATGTCTCCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTACGTTCTTTCTGGTGGAAAGGACTCCACTGTAAAGCTTTGGGACGTGGGGACAGGGAGACAGGTCAAACAGTATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGATGAACCAAGCAATGAGATTGTTATCTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCAAACCACGTCGGTGCACCTCGGTGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAAACTCTATAG 2643 43.44 MQYIRLAFEALDHVIQTQYFVLVGKKKVSSTFGKWFQINTCLTVSITFFIFMISLAAAYDSLDPNGNIEIKWDVMYWTGDGYVATVTITNFQMYRHITSPGWTLGWVWAKKEIIWSMQGAEATDQGDCSTFRETIPHSCRRDPTVVDLLPGVPYNKQVDGCCKGGVLTSWGQDPSSAVSAFQLTVGHSGSSNKTVALPKNFTLYAPGLGYTCGQATIAPTSAFYSSDSRRKTNALMTWNVTCTYSQFLASKTPTCCVSMSSFYNSKITPCQACACGCQDSTTCILTELDLQSVTGLNEPTNDNTPLLQCTRHNCPIQVHWHVKENYKGYWRVKITITNLNYQLNYSQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVHSEIVFQKDSTFTFKQGWAFPRNVYFDGDECKQNGESSTSESKIPNAKIRESKQYKQKNKEMEGSFEQTLQDGKLYRQAASAAASATMTPLNVDAPPNKLLELVAKGLAVEKDEMLRGNPASVLCEFGSSVPTTQASRASAMDFSAVQDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTILISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGTNGAINQVRYSATGSMYVTASKDGAIRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSGGKDSTVKLWDVGTGRQVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 74854290 74862995 + Tan0013351.1 Tan05g2342 753650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 608 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 713 745 - -
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 765 798 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 Pfam WD domain, G-beta repeat 717 745 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 Pfam WD domain, G-beta repeat 750 789 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 Pfam WD domain, G-beta repeat 620 655 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 Pfam WD domain, G-beta repeat 564 598 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 664 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 757 794 - -
Tan05g2342 880 CDD WD40 563 877 - -
Tan05g2342 880 Pfam COBRA-like protein 82 245 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan05g2342 880 Gene3D - 548 879 IPR015943 GO:0005515(InterPro)
Tan05g2342 880 PANTHER PROTEIN COBRA 45 437 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Tan05g2342 880 SMART WD40_4 616 655 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 SMART WD40_4 702 745 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 SMART WD40_4 837 877 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 SMART WD40_4 560 599 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 SMART WD40_4 748 789 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 SMART WD40_4 661 699 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 FunFam Cleavage stimulation factor subunit 50 550 880 - -
Tan05g2342 880 PRINTS G protein beta WD-40 repeat signature 776 790 IPR020472 -
Tan05g2342 880 PRINTS G protein beta WD-40 repeat signature 732 746 IPR020472 -
Tan05g2342 880 PRINTS G protein beta WD-40 repeat signature 864 878 IPR020472 -
Tan05g2342 880 ProSitePatterns Trp-Asp (WD) repeats signature. 776 790 IPR019775 -
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 713 754 IPR001680 GO:0005515(InterPro)
Tan05g2342 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 657 - -
Tan05g2342 880 SUPERFAMILY WD40 repeat-like 559 877 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2342 K14406 - - csv:101206503 771.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2342 Tan-Chr5:74854290 Tan09g2023 Tan-Chr9:70835222 5.20E-151 dispersed
Tan04g1898 Tan-Chr4:62525551 Tan05g2342 Tan-Chr5:74854290 9.70E-156 wgd
Tan05g2342 Tan-Chr5:74854290 Tan09g2022 Tan-Chr9:70831783 3.60E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2023 . 48 447 COBRA Gene Family AT5G60920 79.8 1.3e-208 723.0
Tan04g1899 . 42 440 COBRA Gene Family AT5G60920 77.2 3.0e-202 701.8
Tan09g2022 . 55 454 COBRA Gene Family AT5G60920 67.8 2.6e-177 619.0
Tan04g1898 . 31 414 COBRA Gene Family AT5G60920 65.5 1.2e-169 593.6
Tan05g2342 . 70 433 COBRA Gene Family AT5G60920 62.7 7.5e-145 511.1
Tan01g0795 . 1 348 COBRA Gene Family AT5G60920 55.7 9.0e-114 407.9
Tan09g2023 . 18 451 COBRA Gene Family AT3G02210 73.0 4.2e-205 711.4
Tan04g1899 . 10 446 COBRA Gene Family AT3G02210 74.2 1.0e-203 706.8
Tan09g2022 . 27 453 COBRA Gene Family AT3G02210 66.4 2.0e-178 622.9
Tan04g1898 . 5 417 COBRA Gene Family AT3G02210 63.6 1.3e-169 593.6
Tan05g2342 . 44 433 COBRA Gene Family AT3G02210 60.7 1.6e-148 523.5
Tan01g0795 . 1 355 COBRA Gene Family AT3G02210 56.4 9.0e-115 411.4
Tan09g2023 . 18 446 COBRA Gene Family AT3G29810 74.0 8.0e-201 697.2
Tan04g1899 . 9 446 COBRA Gene Family AT3G29810 72.1 2.7e-196 682.2
Tan09g2022 . 38 436 COBRA Gene Family AT3G29810 67.0 6.4e-174 607.8
Tan04g1898 . 14 416 COBRA Gene Family AT3G29810 63.9 6.8e-168 587.8
Tan05g2342 . 51 433 COBRA Gene Family AT3G29810 60.5 4.2e-149 525.4
Tan01g0795 . 1 353 COBRA Gene Family AT3G29810 54.9 9.7e-114 407.9
Tan09g2022 . 32 363 COBRA Gene Family AT5G15630 83.1 1.1e-176 616.7
Tan04g1898 . 9 327 COBRA Gene Family AT5G15630 79.2 4.5e-167 584.7
Tan09g2023 . 31 361 COBRA Gene Family AT5G15630 73.8 4.5e-151 531.6
Tan04g1899 . 25 356 COBRA Gene Family AT5G15630 68.1 7.0e-144 507.7
Tan05g2342 . 48 374 COBRA Gene Family AT5G15630 64.8 2.6e-138 489.2
Tan09g2023 . 18 224 COBRA Gene Family AT5G60950 57.2 3.3e-64 242.3
Tan04g1899 . 38 218 COBRA Gene Family AT5G60950 62.4 1.2e-63 240.4
Tan04g1898 . 27 207 COBRA Gene Family AT5G60950 56.9 4.6e-58 221.9
Tan09g2022 . 51 231 COBRA Gene Family AT5G60950 58.0 6.0e-58 221.5
Tan05g2342 . 66 246 COBRA Gene Family AT5G60950 51.9 1.1e-48 190.7
Tan04g1899 . 14 425 COBRA Gene Family AT1G09790 52.3 5.0e-134 475.3
Tan09g2022 . 27 434 COBRA Gene Family AT1G09790 52.3 4.2e-133 472.2
Tan09g2023 . 32 432 COBRA Gene Family AT1G09790 53.3 1.2e-132 470.7
Tan01g0795 . 1 336 COBRA Gene Family AT1G09790 63.6 2.4e-128 456.4
Tan10g1052 . 31 628 COBRA Gene Family AT4G16120 68.4 2.8e-258 888.6
Tan01g1680 . 60 657 COBRA Gene Family AT4G16120 54.4 4.7e-205 711.8
Tan01g4517 . 41 641 COBRA Gene Family AT4G16120 52.5 1.3e-199 693.7
Tan10g1052 . 6 633 COBRA Gene Family AT3G16860 63.3 7.3e-243 837.4
Tan01g1680 . 60 663 COBRA Gene Family AT3G16860 52.8 1.4e-196 683.7
Tan01g4517 . 33 637 COBRA Gene Family AT3G16860 50.8 1.4e-190 663.7
Tan10g1052 . 9 648 COBRA Gene Family AT5G49270 61.7 2.2e-242 835.9
Tan01g1680 . 60 657 COBRA Gene Family AT5G49270 52.2 4.0e-196 682.2
Tan01g4517 . 37 642 COBRA Gene Family AT5G49270 51.4 6.4e-194 674.9
Tan01g4517 . 1 665 COBRA Gene Family AT3G20580 60.7 6.2e-253 870.9
Tan01g1680 . 5 678 COBRA Gene Family AT3G20580 60.4 7.5e-251 864.0
Tan10g1052 . 27 646 COBRA Gene Family AT3G20580 54.3 7.9e-208 721.1
Tan01g1680 . 60 681 COBRA Gene Family AT4G27110 63.2 5.4e-241 831.2
Tan01g4517 . 21 641 COBRA Gene Family AT4G27110 59.9 1.3e-231 800.0
Tan10g1052 . 24 645 COBRA Gene Family AT4G27110 51.9 6.0e-200 694.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32