Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g2342 | ATGCAATATATAAGGCTTGCTTTTGAGGCTTTGGATCATGTAATTCAAACCCAATATTTTGTGTTAGTGGGGAAAAAAAAAGTCTCTTCCACATTTGGAAAATGGTTTCAGATAAACACATGCTTAACTGTCTCAATCACTTTCTTTATATTTATGATTTCTCTGGCAGCTGCATACGACTCGTTGGACCCGAATGGAAACATCGAAATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGTGGCAACAGTGACGATAACCAACTTTCAGATGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTTTGGGCGAAGAAAGAGATCATCTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTAGAGAGACTATCCCACATAGTTGCAGAAGAGATCCAACAGTAGTAGACTTGCTTCCTGGTGTTCCTTATAACAAACAGGTCGATGGGTGTTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTAACTGTTGGTCATTCTGGTAGTTCAAATAAAACAGTGGCACTTCCCAAGAATTTCACCTTGTATGCTCCGGGCCTAGGCTACACGTGCGGCCAGGCAACGATTGCTCCGACATCAGCTTTCTACTCATCTGATAGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCACTTACTCACAGTTTCTTGCTTCCAAAACGCCAACTTGCTGTGTCTCCATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTCAAGCATGTGCTTGTGGCTGTCAAGACAGTACGACATGTATCCTAACCGAATTGGATCTTCAAAGCGTTACGGGATTGAATGAACCTACAAATGATAATACTCCATTGTTGCAGTGCACGAGACATAACTGCCCAATTCAAGTTCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTGAAGATAACTATCACCAATCTCAACTATCAACTTAACTATTCACAATGGACTCTTGTTGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCTAAGAATGACACAGCTCTGTTTCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATCGTCTTTCAGAAGGATTCAACATTTACATTCAAACAGGGTTGGGCTTTCCCTCGAAACGTTTATTTTGATGGAGATGAATGTAAGCAGAATGGAGAATCATCAACCAGTGAATCGAAAATCCCAAATGCCAAAATTCGAGAGAGCAAGCAGTATAAGCAAAAAAACAAAGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGGAAGCTTTACAGACAAGCTGCAAGTGCTGCCGCTTCTGCTACAATGACGCCTCTGAATGTTGATGCCCCGCCTAATAAGCTTTTGGAGCTCGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCGGCTTCTGTATTATGCGAATTTGGTTCATCAGTGCCCACTACACAGGCCTCTCGTGCTTCTGCAATGGACTTCAGCGCTGTGCAGGATACAAAAGGTTCCTCGAAGAGTTTTCCGAAGCACGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCCGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGAACATTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTATTCTTATATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCCATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTTTATCTGCAAATGTTCCGGAAATAGGAACTAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACGGGTAGTATGTATGTCACTGCTTCGAAAGACGGTGCAATTCGTTTATGGGATGGCATTAGTGCAAAATGTCTCCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTACGTTCTTTCTGGTGGAAAGGACTCCACTGTAAAGCTTTGGGACGTGGGGACAGGGAGACAGGTCAAACAGTATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGATGAACCAAGCAATGAGATTGTTATCTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCAAACCACGTCGGTGCACCTCGGTGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAAACTCTATAG | 2643 | 43.44 | MQYIRLAFEALDHVIQTQYFVLVGKKKVSSTFGKWFQINTCLTVSITFFIFMISLAAAYDSLDPNGNIEIKWDVMYWTGDGYVATVTITNFQMYRHITSPGWTLGWVWAKKEIIWSMQGAEATDQGDCSTFRETIPHSCRRDPTVVDLLPGVPYNKQVDGCCKGGVLTSWGQDPSSAVSAFQLTVGHSGSSNKTVALPKNFTLYAPGLGYTCGQATIAPTSAFYSSDSRRKTNALMTWNVTCTYSQFLASKTPTCCVSMSSFYNSKITPCQACACGCQDSTTCILTELDLQSVTGLNEPTNDNTPLLQCTRHNCPIQVHWHVKENYKGYWRVKITITNLNYQLNYSQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVHSEIVFQKDSTFTFKQGWAFPRNVYFDGDECKQNGESSTSESKIPNAKIRESKQYKQKNKEMEGSFEQTLQDGKLYRQAASAAASATMTPLNVDAPPNKLLELVAKGLAVEKDEMLRGNPASVLCEFGSSVPTTQASRASAMDFSAVQDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTILISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGTNGAINQVRYSATGSMYVTASKDGAIRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSGGKDSTVKLWDVGTGRQVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL | 880 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 74854290 | 74862995 | + | Tan0013351.1 | Tan05g2342 | 753650 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 567 | 608 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 713 | 745 | - | - | |
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 765 | 798 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | Pfam | WD domain, G-beta repeat | 717 | 745 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | Pfam | WD domain, G-beta repeat | 750 | 789 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | Pfam | WD domain, G-beta repeat | 620 | 655 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | Pfam | WD domain, G-beta repeat | 564 | 598 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 623 | 664 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 757 | 794 | - | - | |
| Tan05g2342 | 880 | CDD | WD40 | 563 | 877 | - | - | |
| Tan05g2342 | 880 | Pfam | COBRA-like protein | 82 | 245 | IPR006918 | GO:0010215(InterPro)|GO:0016020(InterPro) | |
| Tan05g2342 | 880 | Gene3D | - | 548 | 879 | IPR015943 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | PANTHER | PROTEIN COBRA | 45 | 437 | IPR006918 | GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER) | |
| Tan05g2342 | 880 | SMART | WD40_4 | 616 | 655 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | SMART | WD40_4 | 702 | 745 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | SMART | WD40_4 | 837 | 877 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | SMART | WD40_4 | 560 | 599 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | SMART | WD40_4 | 748 | 789 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | SMART | WD40_4 | 661 | 699 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | FunFam | Cleavage stimulation factor subunit 50 | 550 | 880 | - | - | |
| Tan05g2342 | 880 | PRINTS | G protein beta WD-40 repeat signature | 776 | 790 | IPR020472 | - | |
| Tan05g2342 | 880 | PRINTS | G protein beta WD-40 repeat signature | 732 | 746 | IPR020472 | - | |
| Tan05g2342 | 880 | PRINTS | G protein beta WD-40 repeat signature | 864 | 878 | IPR020472 | - | |
| Tan05g2342 | 880 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 776 | 790 | IPR019775 | - | |
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 713 | 754 | IPR001680 | GO:0005515(InterPro) | |
| Tan05g2342 | 880 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 623 | 657 | - | - | |
| Tan05g2342 | 880 | SUPERFAMILY | WD40 repeat-like | 559 | 877 | IPR036322 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g2342 | Tan-Chr5:74854290 | Tan09g2023 | Tan-Chr9:70835222 | 5.20E-151 | dispersed | |
| Tan04g1898 | Tan-Chr4:62525551 | Tan05g2342 | Tan-Chr5:74854290 | 9.70E-156 | wgd | |
| Tan05g2342 | Tan-Chr5:74854290 | Tan09g2022 | Tan-Chr9:70831783 | 3.60E-160 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g2342 | K14406 | - | csv:101206503 | 771.155 |