Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2402 ATGAGTGAGGATTATGATTCAAGGGATATGGAGTTTGCCACTGCAGTAGCATCAGCTGCATTTGCAATTCGCTCGCAAGAAGAAACAGATTTACAAAATCAGAAAAAGAAGAGAGAAAGCCAAGAAACCCCAATGAAAAAGGTTAAAAGCAGAAAAGATGACACAGCTGCATTCCCTCCAAGCATAACAAGGCGATTGTCTAACAAAGAAACAACCAATCCCGTAAAGAAGCCAATGGGACATGAAAGGGACTCAGTGACTGGAATTCCTTTACCGCCACCGAGACGAAGCCTGGTACCAACAAAAGCGGATGTGTGGGAGAGAAATAAGATAGAGAAGATTAGAAAAAGGTATCAAAAGATAAAATCTTCAATTCTTGACTGGGAGAATAAGAAAAAAATGCATGCAAAACTTCATATGGAAAAGAAAAAGGCTGAACTGGAGCGCAAAAAGGCAGTGTTTTTGCAATATTACCAGGACAACATAGTACGAATTGACCAGATTGCAGGGGGAGCAAGGGCACAACTAGAAGAGAAAAGAAAAAAGGAAGAGAATAAAGCAAGAGAAACAGCAAACAGAATCAGATCAACTGGAAGACTTCCTGTCACTTGTTTCTGCTTCCAGTATCACTAA 633 40.28 MSEDYDSRDMEFATAVASAAFAIRSQEETDLQNQKKKRESQETPMKKVKSRKDDTAAFPPSITRRLSNKETTNPVKKPMGHERDSVTGIPLPPPRRSLVPTKADVWERNKIEKIRKRYQKIKSSILDWENKKKMHAKLHMEKKKAELERKKAVFLQYYQDNIVRIDQIAGGARAQLEEKRKKEENKARETANRIRSTGRLPVTCFCFQYH 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75245777 75247901 + Tan0011444.4 Tan05g2402 753710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2402 210 Coils Coil 111 131 - -
Tan05g2402 210 MobiDBLite consensus disorder prediction 23 97 - -
Tan05g2402 210 Coils Coil 173 193 - -
Tan05g2402 210 PANTHER OS02G0116800 PROTEIN 30 206 - -
Tan05g2402 210 Pfam Remorin, C-terminal region 101 202 IPR005516 -
Tan05g2402 210 MobiDBLite consensus disorder prediction 29 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2402 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2400 Tan-Chr5:75245018 Tan05g2402 Tan-Chr5:75245777 9.30E-112 dispersed
Tan05g2401 Tan-Chr5:75245777 Tan05g2402 Tan-Chr5:75245777 2.40E-110 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007325 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 0 1 1 1 1 5 4 1 36