Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2416 ATGGGGTGTGTGAACACGAAGCAGGCGGTGTCCGTTACGCCTGCATTCGATCACTCCGGTGTGTTTCGGGACAATGAATCGACGGCGATGGGCAACTCGGGTCGGAGCCAACTTGGGTTTGGAGAGATTGAGAAGGGTTCGAAGCCGAAGGCCAAGACGAAGACGAAGGGGTCCAGTGAATTCAATGGGGTTGCGAGCGAGTTCGGTGAGTCGGGTCGGGCGAGTTCTAATGGCGGAGGGAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAATAAGTATATGGAAGGCGAGCAAGTGGCGGCGGGGTGGCCGGTTTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTTCCACTCCGGTCTGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATACAGCAGCGTATTCCGAGCACGTGAACTTGAAACGGGGAGGATAGTAGCTTTAAAGAAGGTTCGGTTCGATAATTTTGAGCCTGAAAGTGTTCGGTTTATGGCACGAGAGATAATGATTCTCCGCAGGCTTGATCACCCCAACATCATCAAATTGGAGGGCTTGATTACATCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGACCATGACATTACTGGACTCCTGTCCTGCCCCGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTTTGTAATTCCAGCCACCGGCAACCTCTAACCAGTCGTGTTGTCACTCTATGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATATTTGGAGTGTTGGCTGTGTTTTCGCAGAACTCCTTGTTGGGAAGCCTATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATTATCCTTCGACAACTGTGAACTTGTTAGAAACTCTTCTTTCCATCGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTACAAAACCGTATGCGTGCGATCCATCAAGCATGCCGATATATCCACCTAGCAAAGAGATTGATGCCAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGTAGTGGAAGATCCCGTGGTCTAGATAGCAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCGGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAAAACGCTATCAAAGGTGGCGAGGTGCAAAAGCTGCCGATTGATAAATTGGAAGAGTCTATCCATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCTACATCAAGTGGATTTGCATGGGCAAGACGACGAAGAGACGATGCCTCTATTAGATCGCATTCGAGATCAATTTCACGTGGACACCTAATTAATGGGCTGGACCATTCTGCTATATTGCATTCAAGAAGCAATGTGGACTCTAAGTTTCATGAAAAGGGAGACATGTCGTCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCCAAGGTTGTGATACGGAATCAGTGGGGCAAGTTTGAGCGTCCTGATTCGTTTGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGTGGCACTTTACTTGCGAGATGAAATGGAAGCTAAGAGGAGTAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACATGAGAGGCACATCCGACAGACAGTTCGAAGATCGTGGTTCCAAAGAGGTAAAAATTGA 2091 45.77 MGCVNTKQAVSVTPAFDHSGVFRDNESTAMGNSGRSQLGFGEIEKGSKPKAKTKTKGSSEFNGVASEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPVWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSSHRQPLTSRVVTLWYRPPELLLGSTDYNASVDIWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPSTTVNLLETLLSIEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESRRKKGSGRSRGLDSRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEENAIKGGEVQKLPIDKLEESIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSHSRSISRGHLINGLDHSAILHSRSNVDSKFHEKGDMSSISRSSSKGHESNERSKVVIRNQWGKFERPDSFDTSDEYHSQEFAVALYLRDEMEAKRSNLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75359941 75365660 + Tan0021999.1 Tan05g2416 753724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2416 696 MobiDBLite consensus disorder prediction 431 456 - -
Tan05g2416 696 MobiDBLite consensus disorder prediction 56 81 - -
Tan05g2416 696 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2416 696 MobiDBLite consensus disorder prediction 578 604 - -
Tan05g2416 696 FunFam probable serine/threonine-protein kinase At1g54610 210 450 - -
Tan05g2416 696 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Tan05g2416 696 Gene3D Transferase(Phosphotransferase) domain 1 210 449 - -
Tan05g2416 696 PANTHER CELL DIVISION PROTEIN KINASE 127 411 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan05g2416 696 CDD STKc_CDK9_like 127 411 - -
Tan05g2416 696 SMART serkin_6 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2416 696 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Tan05g2416 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2416 696 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2416 696 MobiDBLite consensus disorder prediction 18 81 - -
Tan05g2416 696 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524(InterPro)
Tan05g2416 696 MobiDBLite consensus disorder prediction 421 456 - -
Tan05g2416 696 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2416 Tan-Chr5:75359941 Tan11g0460 Tan-Chr11:3722755 2.90E-189 dispersed
Tan05g2416 Tan-Chr5:75359941 Tan05g2417 Tan-Chr5:75359941 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67660 PF00069 Pkinase 4.60E-69 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2416 - - - 0.0