Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2421 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGGCTGTGCTAGCGGGGGAAAGAGTGGGGGAGATGGGTTTATAGACAGGAGCAAAGTAAGGATTTTGCTGTGCGATAATGATTCAAATAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAAGTCATTTCCGTGAGTTCAGCTAGACAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTCGACCTCCCAATGGCCAAAGGTATGAAAATGTTGAAGTACATCACCCGGGATAAAGAGCTGCGCCGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTTCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGAACAAATGAGCTATTAAACTTGTGGACACACATGTGGAGAAGAAGGCGCATGCTTGGATTGGCAGAAAAAAACATCTTGAATTATGAATTTGATTTGGTGGCATCAGACCCAAGTGATGCTAATACAAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCGGAGATGGGAATTGCCACACATCAGGAAGATGAGTCTGGTATTGTTGCTGCACCAGTAGAGCCTCCTGCTGTTCATTCAGTGGAACATCAGCCAGATGTACCTGGAATCAGTGAGCGCCGAACAGGGCAACTTTCATCATGCCCTAGGAAGAGTGAACTAAAGATTGGTGAATCATCCGCTTTTTTTACCTATGTCAAATCAAGAAATGTGAAAAATAAGGCAGATGTTGAAGACAATGCCAAACGACTTTTGCTGGATGAAAATCATCAAGAAACTGGTCAGCTTGCAGTTCGTCTTCCCCAAATACAAGAAAACGGGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAATTGCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTATGGAGAGATCTTGTACGCCACCTGCTGGTACAGAAGTTCACCGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGTGTTTGTAGATCCTGGAAATGGGTCTCAATTTGACATTTCAGGGCTACCTGTGCAAACACAAACTGCTTATCCGTTCTATATGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTACAGTCATTTTCACCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCAATGAATATATGTTTACAACCTGGTCAAATGCCAGCTACTACTACTCATACTTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGAAAGGAGCGTTGTTTCGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTCCGAGGCCAGTTTGTGAGAAAGGTTAATGGTGTCAATGTTGATCTTAATGGACAACCTGCATCAGCTGATGATGTCGAGGATGAAGATGACGAGGAGGAGCAACTATCAAGGGATTCCTCTCATGAAGATGATGGTTCAGGATATTAG 1659 42.86 MDCKELNLNEDCGGCASGGKSGGDGFIDRSKVRILLCDNDSNSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGIATHQEDESGIVAAPVEPPAVHSVEHQPDVPGISERRTGQLSSCPRKSELKIGESSAFFTYVKSRNVKNKADVEDNAKRLLLDENHQETGQLAVRLPQIQENGEALESHSQGDELPSSTSFPDSFSMERSCTPPAGTEVHRERNINEENCSQVFVDPGNGSQFDISGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYSHFHHCPPNVSGVASYPYYPMNICLQPGQMPATTTHTSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDDEEEQLSRDSSHEDDGSGY 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75394197 75397804 - Tan0016548.1 Tan05g2421 753729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2421 552 MobiDBLite consensus disorder prediction 226 251 - -
Tan05g2421 552 MobiDBLite consensus disorder prediction 180 211 - -
Tan05g2421 552 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160(InterPro)
Tan05g2421 552 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160(InterPro)
Tan05g2421 552 ProSiteProfiles CCT domain profile. 469 511 IPR010402 GO:0005515(InterPro)
Tan05g2421 552 SMART REC_2 32 147 IPR001789 GO:0000160(InterPro)
Tan05g2421 552 MobiDBLite consensus disorder prediction 308 335 - -
Tan05g2421 552 SUPERFAMILY CheY-like 30 158 IPR011006 -
Tan05g2421 552 MobiDBLite consensus disorder prediction 308 347 - -
Tan05g2421 552 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 203 IPR045279 GO:0009736(InterPro)
Tan05g2421 552 MobiDBLite consensus disorder prediction 515 552 - -
Tan05g2421 552 FunFam Two-component response regulator-like APRR1 32 275 - -
Tan05g2421 552 Gene3D - 32 232 - -
Tan05g2421 552 MobiDBLite consensus disorder prediction 525 541 - -
Tan05g2421 552 Pfam CCT motif 469 511 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2421 Tan-Chr5:75394197 Tan07g0542 Tan-Chr7:9036205 6.20E-09 dispersed
Tan02g1139 Tan-Chr2:23489794 Tan05g2421 Tan-Chr5:75394197 6.10E-06 transposed
Tan10g0003 Tan-Chr10:143696 Tan05g2421 Tan-Chr5:75394197 1.20E-07 transposed
Tan05g2421 Tan-Chr5:75394197 Tan09g2096 Tan-Chr9:71348710 6.50E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27576 PF00072 Response_reg 1.30E-16 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2421 K12127 - csv:101220107 986.867