Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2430 ATGGCAGTTGTTTGGATATTGTTAGTCATGGGGTTTCTTTCGTTGTGCTCGTTCGTTCATGGATATGGCGGAAGAAACTGGATCAATGGCGCTCATGCTACTTTCTATGGAGGCCCCGATGCCTCCGGTACATTGGGTGGGGCTTGTGGATATGGAAATGTATACAGCGAGAACTATGGGACAAAAACGACGGCGTTGAGTACAGCCTTGTTCGACAATGGGCTAAGTTGTGGAGCTTGTTTTGAGGTAAAATGTGTAAATGACCAAAAATGGTGCCTCCCCGGCTCCGTCGTGGTCACCACCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGATCCTTCACTCCGCCATTTTGATCTCTCTCAACCTGCCTTTCAGACCATCGCTCAAACTATCGCCGGAGTCGTTCCCGTTGCTTATAGAAGGGTTGGATGTGCAAGAAGGGGAGGAATAAAGTTCAGAATTGAGGGCAATCCATACTTCAATTTGGTACTCATAAGCAATGTGGGAGGTGCAGGAGATGTCCATGGTGTTTACATTAAAGGGTCTAGGACTGGTTGGAGGACCATGTTCAGAAATTGGGGTCAAAATTGGCAAACCAACGATTACCTTGTAGGACAATCCCTCTCTTTTAAGGTCATTACCAGTGATGGTCGCTCTGTTGTGTCCTACAATGTTGCCCCTTCTTCTTGGTCCTTTGGACAAACCTTTTTTGGCAAACAGTTTCACTAA 732 47.4 MAVVWILLVMGFLSLCSFVHGYGGRNWINGAHATFYGGPDASGTLGGACGYGNVYSENYGTKTTALSTALFDNGLSCGACFEVKCVNDQKWCLPGSVVVTTTNFCPPGGWCDPSLRHFDLSQPAFQTIAQTIAGVVPVAYRRVGCARRGGIKFRIEGNPYFNLVLISNVGGAGDVHGVYIKGSRTGWRTMFRNWGQNWQTNDYLVGQSLSFKVITSDGRSVVSYNVAPSSWSFGQTFFGKQFH 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75460904 75462575 + Tan0013331.1 Tan05g2430 753738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2430 243 PRINTS Expansin signature 85 96 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 225 241 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 125 138 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 58 72 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 161 182 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 108 125 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 196 217 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 97 107 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 PRINTS Expansin signature 149 161 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 CDD DPBB_EXPA_N 27 145 - -
Tan05g2430 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Tan05g2430 243 PANTHER EXPANSIN-A15 15 242 IPR002963 GO:0009664(InterPro)
Tan05g2430 243 FunFam Expansin 150 242 - -
Tan05g2430 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Tan05g2430 243 SUPERFAMILY Barwin-like endoglucanases 10 168 IPR036908 -
Tan05g2430 243 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Tan05g2430 243 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576(InterPro)
Tan05g2430 243 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576(InterPro)
Tan05g2430 243 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Tan05g2430 243 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576(InterPro)
Tan05g2430 243 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576(InterPro)
Tan05g2430 243 Gene3D - 150 242 IPR036749 -
Tan05g2430 243 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Tan05g2430 243 Gene3D - 21 146 IPR036908 -
Tan05g2430 243 SMART dpbb_1 63 140 IPR007112 -
Tan05g2430 243 Pfam Lytic transglycolase 63 140 IPR009009 -
Tan05g2430 243 SUPERFAMILY PHL pollen allergen 147 238 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2430 Tan-Chr5:75460904 Tan09g2109 Tan-Chr9:71460094 5.90E-97 dispersed
Tan11g0502 Tan-Chr11:4239859 Tan05g2430 Tan-Chr5:75460904 6.90E-98 wgd
Tan04g1065 Tan-Chr4:9555230 Tan05g2430 Tan-Chr5:75460904 3.00E-96 wgd
Tan05g2430 Tan-Chr5:75460904 Tan09g2108 Tan-Chr9:71460094 5.90E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2430 - - - 0.0