Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2432 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCAATGGTAGCAGGCAAGTGACTTTCTCTAAGAGAAAGATAGGAATTATGAAGAAAGCTAAGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTTCTCATGTTTTCACCAACTGGAAAGTCGTCGATATATGAAGGTGAACGCAGCAAAATTGCAGAGATCGTCACAAAATTTGCTCAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTGAAGAAAACATTTAAGAAGTTAGACCATGATGTAAACATAAAAGATTTTATGGGTTCAAGCTCTCAAGATGTTGAGGAATTGACCAATGAAGTTATCGTATTGCGAGATCAGATTGCTGATTCACATAAGAGACTGAGCTATTGGAGGAATCTTGATAATATCAACAATATAGAACATCTCCAGCAGATGGAAGATCTAGTAAGGGAGTCCCTAAACCAAACACGTCTACACAAGGAAAATGTAAGAAGACACCAAATGCTCTCACAGGAGTTCACTAGCCAGTATCCGGGTGGTGGGATGTCCTTACCTTTGATAATGGATGAAATGCAAGGCACTCAACCCCTGTTATGGCTTCCCAACTATGGCACTCAACAGATTACTTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCCATGGCTACATCGTTTCCGAGCTTTCCTAGTTTCTTCAACCATGGGAAGCAAATTGAAGTTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGGTTTAAATGAACTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGACCAATATCCATACCCTACATGTGATGGTTCCAACTTCCAAGATGAAAAGAGACTGAATCTTGATATGGAGATGAACTTGCATGCAAATTGCGTCGATAATCAACTAAATGGAAAGTTGGAGATCTCTAGAGCTCTATATGATGATGACCAGCATTCTTGGGCTTCTATACCAGGGGCTTGTAGCATTCCAATGTACCAAAGCAATGCGTACCACCATGTAGGTTCTCTTTTAACTGGTTCCTTTAAAACTTGA 1104 40.85 MGRVKLKIKKLESNGSRQVTFSKRKIGIMKKAKELAILCDIDIVLLMFSPTGKSSIYEGERSKIAEIVTKFAQLTPQERAKRKMESLEVLKKTFKKLDHDVNIKDFMGSSSQDVEELTNEVIVLRDQIADSHKRLSYWRNLDNINNIEHLQQMEDLVRESLNQTRLHKENVRRHQMLSQEFTSQYPGGGMSLPLIMDEMQGTQPLLWLPNYGTQQITLPNEPSFLQPGDVECSMATSFPSFPSFFNHGKQIEVGISGQVDSMPQGDGGLNELSGTSCSTLQLGDQYPYPTCDGSNFQDEKRLNLDMEMNLHANCVDNQLNGKLEISRALYDDDQHSWASIPGACSIPMYQSNAYHHVGSLLTGSFKT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75465033 75468680 - Tan0021044.1 Tan05g2432 753740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2432 367 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Tan05g2432 367 CDD MADS 2 54 - -
Tan05g2432 367 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g2432 367 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 Coils Coil 114 134 - -
Tan05g2432 367 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1067 Tan-Chr4:9557450 Tan05g2432 Tan-Chr5:75465033 1.70E-86 dispersed
Tan05g2432 Tan-Chr5:75465033 Tan01g3872 Tan-Chr1:103600486 1.00E-12 dispersed
Tan04g1066 Tan-Chr4:9557450 Tan05g2432 Tan-Chr5:75465033 1.70E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27579 PF00319 SRF-TF 1.10E-18 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2432 - - - 0.0