Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2432 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCAATGGTAGCAGGCAAGTGACTTTCTCTAAGAGAAAGATAGGAATTATGAAGAAAGCTAAGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTTCTCATGTTTTCACCAACTGGAAAGTCGTCGATATATGAAGGTGAACGCAGCAAAATTGCAGAGATCGTCACAAAATTTGCTCAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTGAAGAAAACATTTAAGAAGTTAGACCATGATGTAAACATAAAAGATTTTATGGGTTCAAGCTCTCAAGATGTTGAGGAATTGACCAATGAAGTTATCGTATTGCGAGATCAGATTGCTGATTCACATAAGAGACTGAGCTATTGGAGGAATCTTGATAATATCAACAATATAGAACATCTCCAGCAGATGGAAGATCTAGTAAGGGAGTCCCTAAACCAAACACGTCTACACAAGGAAAATGTAAGAAGACACCAAATGCTCTCACAGGAGTTCACTAGCCAGTATCCGGGTGGTGGGATGTCCTTACCTTTGATAATGGATGAAATGCAAGGCACTCAACCCCTGTTATGGCTTCCCAACTATGGCACTCAACAGATTACTTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCCATGGCTACATCGTTTCCGAGCTTTCCTAGTTTCTTCAACCATGGGAAGCAAATTGAAGTTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGGTTTAAATGAACTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGACCAATATCCATACCCTACATGTGATGGTTCCAACTTCCAAGATGAAAAGAGACTGAATCTTGATATGGAGATGAACTTGCATGCAAATTGCGTCGATAATCAACTAAATGGAAAGTTGGAGATCTCTAGAGCTCTATATGATGATGACCAGCATTCTTGGGCTTCTATACCAGGGGCTTGTAGCATTCCAATGTACCAAAGCAATGCGTACCACCATGTAGGTTCTCTTTTAACTGGTTCCTTTAAAACTTGA 1104 40.85 MGRVKLKIKKLESNGSRQVTFSKRKIGIMKKAKELAILCDIDIVLLMFSPTGKSSIYEGERSKIAEIVTKFAQLTPQERAKRKMESLEVLKKTFKKLDHDVNIKDFMGSSSQDVEELTNEVIVLRDQIADSHKRLSYWRNLDNINNIEHLQQMEDLVRESLNQTRLHKENVRRHQMLSQEFTSQYPGGGMSLPLIMDEMQGTQPLLWLPNYGTQQITLPNEPSFLQPGDVECSMATSFPSFPSFFNHGKQIEVGISGQVDSMPQGDGGLNELSGTSCSTLQLGDQYPYPTCDGSNFQDEKRLNLDMEMNLHANCVDNQLNGKLEISRALYDDDQHSWASIPGACSIPMYQSNAYHHVGSLLTGSFKT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75465033 75468680 - Tan0021044.1 Tan05g2432 753740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2432 367 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Tan05g2432 367 CDD MADS 2 54 - -
Tan05g2432 367 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g2432 367 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2432 367 Coils Coil 114 134 - -
Tan05g2432 367 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2432 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1067 Tan-Chr4:9557450 Tan05g2432 Tan-Chr5:75465033 1.70E-86 dispersed
Tan05g2432 Tan-Chr5:75465033 Tan01g3872 Tan-Chr1:103600486 1.00E-12 dispersed
Tan04g1066 Tan-Chr4:9557450 Tan05g2432 Tan-Chr5:75465033 1.70E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00080 Csa01g00558 Chy12g01534 Cme12g01984 . . . . . . . . Sed01g2340 . . . . Car13g00970 . . . Bhi08g01149 Tan05g2432 Cmetu12g1892 . Hepe07g2502 . . Cla04g01191 . . Cco01g1805 Clacu04g1277 . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
Tan05g2432 . 1 261 Type I MADS-box Gene Family AT2G03060 50.6 1.0e-63 241.5
Tan01g0599 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 3.0e-50 196.4
Tan09g0041 . 1 163 Type I MADS-box Gene Family AT5G48670 66.3 2.0e-55 213.8
Tan05g1851 . 1 175 Type I MADS-box Gene Family AT5G48670 54.5 2.8e-46 183.3
Tan01g0599 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.8e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27579 PF00319 SRF-TF 1.10E-18 No_clan Tan TF