Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2447 ATGGCAGAGGAAAACAGGGTAATCTTACATGGAATGTGGGCTAGTCCCTACGTGAAAAGCGTAGAACTTGCCCTCCGAATTAAGGGCATACCCTTCGATTACATCGAAGAAGATTTGAAGAACAAAAGCCCCCTTCTTCTAAAGTACAATCCCATTTACAAGAAGGTCCCTGTTCTAGTCCACCATGGAAAACCCATCTCAGAATCACTCTTCATCATTCAATACATCGACGAAACATGGAAGAACAACGGCAACCCATCTCTTCTTCCAAACGATCCCTACAAAAGAGCTCAAATTCGGTTCTGGGTCACCTTCTTACACCAACAGCTGTTTGATGCGTTTCTCACTGTGTTCAAAACGGTCGGAGAAGTGCAACAAAGGGCCGTCGGAGAAGTGAGCGAACGGCTGAAGCAGGTTGAAGAGGGGCTGAAGGAGCTGATGTCAGAGGGGCCGTTTGTGAATGGAGACGAATTGGGGGTTTTGGATATTGTGATGTGTTCGTTGTTTGGGCCGTACAAGCTGCAACAGGAAGTGCTTGGGATCACGCTGATTGGCTCTGAGAAGTATCCATTGATATTGCGGTGGTTGAATGCAATGGCTGAGCATCCGATTGTGAAGGAGGCAACTCCACCGCCGGAGAAGATTCTGGCTGTGCTTCGGTTTCTGCGGCAGAATGCACTGCAATCGGCTGCCGCTTGA 699 48.5 MAEENRVILHGMWASPYVKSVELALRIKGIPFDYIEEDLKNKSPLLLKYNPIYKKVPVLVHHGKPISESLFIIQYIDETWKNNGNPSLLPNDPYKRAQIRFWVTFLHQQLFDAFLTVFKTVGEVQQRAVGEVSERLKQVEEGLKELMSEGPFVNGDELGVLDIVMCSLFGPYKLQQEVLGITLIGSEKYPLILRWLNAMAEHPIVKEATPPPEKILAVLRFLRQNALQSAAA 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75636988 75638225 - Tan0017862.1 Tan05g2447 753755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2447 232 SFLD Main.3: Omega- and Tau-like 4 229 IPR045073 -
Tan05g2447 232 SUPERFAMILY Thioredoxin-like 6 110 IPR036249 -
Tan05g2447 232 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 220 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Tan05g2447 232 Pfam Glutathione S-transferase, C-terminal domain 122 203 IPR004046 -
Tan05g2447 232 CDD GST_N_Tau 7 80 - -
Tan05g2447 232 Gene3D Glutaredoxin 1 88 - -
Tan05g2447 232 Gene3D - 89 230 - -
Tan05g2447 232 Coils Coil 129 149 - -
Tan05g2447 232 CDD GST_C_Tau 93 222 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Tan05g2447 232 SUPERFAMILY GST C-terminal domain-like 78 224 IPR036282 -
Tan05g2447 232 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Tan05g2447 232 SFLD Main (cytGST) 4 229 - -
Tan05g2447 232 FunFam Glutathione S-transferase U9 89 229 - -
Tan05g2447 232 FunFam Tau class glutathione S-transferase 1 88 - -
Tan05g2447 232 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 221 IPR010987 -
Tan05g2447 232 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2447 K00799 - - csv:101217019 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2447 Tan-Chr5:75636988 Tan05g3321 Tan-Chr5:85078506 8.80E-74 dispersed
Tan01g0952 Tan-Chr1:9194078 Tan05g2447 Tan-Chr5:75636988 1.40E-36 transposed
Tan04g1084 Tan-Chr4:9721737 Tan05g2447 Tan-Chr5:75636988 3.90E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75