Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2493 ATGATGATGGCAGAGATGAGATCAAAGAACAATAATAAAGATGAAGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGAAGAATAACAGAGATGTGAAAGAAGAAGGCAATAAATCAGAATCTGCTGAAAAAAAGCCTTCTGAGAAGATCATCCCCTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTATTTCAATAATTATAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAGAGGTACTGGACTGCCGGTGGTGCCCTCCGCAACGTCCCCGTCGGTGCCGGCCGCCGCAAAACCAAGCCTCCCTGCCGGACCTTTCCTGGCTTGCCGGATAATTGCGTCTTTGATTCTTCTGGGATGCTTCCCGTCCAGCCGTTTGAGTTGGAGGACTGGCATGTCGTCACCGCCGCCCAACAGGTCGGTTTCCGGCAAATTTTACCAGTTAAGCGGCGGAGGGATTGCCAAGACGGTCAAACCTGTTGA 501 48.3 MMMAEMRSKNNNKDEEGGIKLFGATIMLKNNRDVKEEGNKSESAEKKPSEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFPGLPDNCVFDSSGMLPVQPFELEDWHVVTAAQQVGFRQILPVKRRRDCQDGQTC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76206244 76206825 - Tan0016189.1 Tan05g2493 753801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2493 166 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan05g2493 166 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan05g2493 166 PANTHER CYCLIC DOF FACTOR 2 19 106 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Tan05g2493 166 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2493 Tan-Chr5:76206244 Tan07g1176 Tan-Chr7:42398646 1.20E-29 dispersed
Tan03g2576 Tan-Chr3:78881393 Tan05g2493 Tan-Chr5:76206244 1.80E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27590 PF02701 zf-Dof 5.30E-32 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2493 - - - 0.0