Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2517 ATGATGGTTTCTGATATTCCGATTTGCCACACTTGTGGTGAACAAGTCGGAGTTGATGCCAATGGTGAGGTTTTCGTTGCTTGCCATGAGTGTCATTTTCCTATTTGCAAAATCTGCGTTCAGTATGATCTTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGTTCTCCGTTTGACGAGAACTTACTGATGGATGCTGATACGAAGACATCAGGAGATCGAAACACAATGGCATCTCATCTCAGTCATTCTCATGATGTCGGAGTTCATGCTAGACATATCAGTAGCGTGTCGACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAAAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTACTGTGAAGACTGAACAAGAAGCTCAAATTCCACCCCCACAACAGATGGAAGAGAAACAGATTTCAGAGGACGCTGCAGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAATATCGGATTACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTTTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGGGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCTATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGGAAGTGGGTTCCATTCTGCAAAAAATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCCTCTTTTGTCAAAGAACGTAGAGCAATGAAAAGAGCCTATGAAGAGTTCAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAAAAAACACCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCCGGAAACAATCCACGCGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGTGCCCATGACATAGAGGGTAATGAACTTCCTCGACTGGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCTGCAGTCCTCACAAACGCCCCCTACATTCTCAACCTTGACTGTGATCACTATGTTAACAACAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATAGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATTCAGGGACCAGTTTATGTTGGTACGGGTTGTGTTTTCAATAGACAGGCACTTTATGGCTATGGACCTCCTTCTATGCCTAGCTTATCTCAGACATCCTCATCCTCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGATCCAACTGAGATTAAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAATATGAGAGGTCAATGCTCATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCTATTCATGTCATTAGTTGTGGTTATGAAGAGAAGACTGCTTGGGGAAAAGAGATTGGTTGGATATATGGTTCTGTCACAGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTAAGGCCAGCATTCAAAGGATCAGCCCCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTTTCAGGCGGCCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCATTCACCTCCCTCCCTCTTATTGCTTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAATCTAGCAAGTACTCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTTGAGCTGCGATGGAGTGGCGTTAGCATCGAAGATATATGGCGTAATGAGCAATTCTGGGTCATAGGAGGCGTCTCGGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACACCGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACGACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCAGTGCTGTTGGCCTCAGTTTTCTCACTTGTTTGGGTGAAGATTAACCCATTTGTGAACCAAGTTGACAGTACTACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA 2952 43.63 MMVSDIPICHTCGEQVGVDANGEVFVACHECHFPICKICVQYDLKEGRNVCLRCGSPFDENLLMDADTKTSGDRNTMASHLSHSHDVGVHARHISSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPPQQMEEKQISEDAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSQTSSSSCSWCGCCSCCCPSKKISKDPTEIKRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFSGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76494917 76501431 - Tan0003023.1 Tan05g2517 753825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2517 983 SUPERFAMILY RING/U-box 3 77 - -
Tan05g2517 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 175 950 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Tan05g2517 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 269 779 IPR029044 -
Tan05g2517 983 MobiDBLite consensus disorder prediction 119 147 - -
Tan05g2517 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 407 550 IPR029044 -
Tan05g2517 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Tan05g2517 983 FunFam Cellulose synthase 372 546 - -
Tan05g2517 983 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 552 581 IPR017896 -
Tan05g2517 983 Pfam Cellulose synthase 255 973 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan05g2517 983 Pfam Zinc-binding RING-finger 7 59 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2517 Tan-Chr5:76494917 Tan06g1408 Tan-Chr6:18243052 0.00E+00 dispersed
Tan05g2517 Tan-Chr5:76494917 Tan05g0894 Tan-Chr5:7188981 1.20E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2517 K10999 - csv:101208988 1916.74