Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2522 ATGAATAACCACCAATTCTATTCCGGTGATCCACTAGAAGATAGTGACGAAAAAGCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCGCCGGCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGAGAATTAATGGTGACAGCCCAAGGAATTCTTCTGGTTCTACCACTCCTCCTTCTGATTCTTGGGCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCCCCTTATCCAAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCGGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACGATGTTGGTTATTACATATTCGTGCGAGCATAATCATTCCGGTCCGGTTTCTAGAAACAGCAATAACCACCAGCAAGCCGCCGTGGAGAAACCCGGTTCGCCGGAGACTGTGCCGGTTCAGCCAGAACCGGAAGTGGAAGAGAAATTTGTGGACATGGGAGACGAGTCGTTGATAACCGGGGACGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCGACTGTGCTCGAGAGCTCGATTTTCTCGGGGAGGTCCACTCGATTGGGAGATTCGATTTCCAGTGACGTGGCAATGCTTTTTCCCATGGGGGATGATGACGTGGACGAGTCGCTTTTCGCGGATCTCGGGGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCGCGGCGGTTCCCGAGGATTGGCGGTGGATGAACAACCGGCTGCAGGGCAGCGGCGGATCACTCCTTGGTGCGGCACCACCACATGA 795 53.58 MNNHQFYSGDPLEDSDEKAPDSPPPNSAAAAGKKGRRGMKKKVVSVRINGDSPRNSSGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVITYSCEHNHSGPVSRNSNNHQQAAVEKPGSPETVPVQPEPEVEEKFVDMGDESLITGDEFSWFGEMETTSSTVLESSIFSGRSTRLGDSISSDVAMLFPMGDDDVDESLFADLGELPECSVVFRRGGSRGLAVDEQPAAGQRRITPWCGTTT 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76564847 76566210 + Tan0016182.1 Tan05g2522 753830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2522 264 Pfam WRKY DNA -binding domain 65 121 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2522 264 SMART WRKY_cls 63 123 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2522 264 MobiDBLite consensus disorder prediction 122 138 - -
Tan05g2522 264 SUPERFAMILY WRKY DNA-binding domain 60 123 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2522 264 MobiDBLite consensus disorder prediction 49 67 - -
Tan05g2522 264 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 18 232 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Tan05g2522 264 Gene3D WRKY domain 51 125 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2522 264 MobiDBLite consensus disorder prediction 122 150 - -
Tan05g2522 264 FunFam WRKY transcription factor 65 47 124 - -
Tan05g2522 264 ProSiteProfiles WRKY domain profile. 64 124 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g2522 264 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2522 Tan-Chr5:76564847 Tan05g2751 Tan-Chr5:79553658 1.00E-30 dispersed
Tan02g0189 Tan-Chr2:1645551 Tan05g2522 Tan-Chr5:76564847 1.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27593 PF03106 WRKY 5.40E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2522 - - - 0.0