Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2530 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCTGTTGACCTCTCCGATGTGGCCTTAGTTCAAACACTAGCGATAGTTGCGACGGAGCTCGTTTCGCGATTATCAGGGAAGTTCTTCTTCTTCCAGCGAAGGAATTCGCGATCTCTGATAAGGAAACTTGAGGTTTGTCTCGTGTTTTTGGACTTTTTGAAGGATACGGATGCCACTTTGCCTCGCACGGCGTTGCTCTGTTTGAAAGAGCTTTATTTGTTGCTCTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCAGTCGATTTCGGGACATTTCAATGATTTGAACTTGGAGTTGTTGACATTTTTGGATGTTTTTCCTCTTGAGGAAGTTGAATTGGAGCTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACGAGGATGTTTGTTGATGAACGTGATGAGGCGTTAAGGACTCGTTTCCTTTCGTTTCTTGACGTGTTTGAGAACGGTCGGCTTCCAAACCCGAGGGAATTGAGGGAGTTTTTTGTGGATAAGTTGAGGATTCGGAGTGCAAAGAGTTGTAGAAGTGAAATTGAGTTTCTGGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCCACTGTAGCGGTGTTAAACAGTTTCGTTGCTTTTACCAGATATAGCAGGTTTTTCCTCTTCGGATTTGAGGAAGATGAAGTTGAATCAGGAGCAGGAACAGCGAACCAGAAAAGGCTGAAGAAGAATTTGATTACGCAGGAGATTGCTGAAACGTTTTTAACGATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGACCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCAATTACTAGATGGTTGGAAGAAGGGCACAACACTTGCCCGAAGACAGGGCAAATGCTCATCCATACTCGCCTCGCTCCCAACCGCGCATTAAGGAATTTGATTATGCAATGGTGCATTGCGGATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTAGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAGTTATCAATTGGATCGCAAGATGCAAAGACCATTGCTGCTCGCGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCAGAAGCCGGTGCCATCCCCCATCTCCAAAAGTTGTTGGCTTCCCCAAACCCAGTAGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAAGTAGGGTGTTTAGGATCAATAACCGAAGTGTTGCGATTCGGACATACTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACGGCTTTATTTAATCTCTCAACCCACACGGATAACTGCATTCGAATGATAGAGGCCGGGGCAGTAACAGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAATCTGCGGGTGCATTGGCCTTGATTGTTAGACAACCCATTGGGGCCAAAGCAGTAAGTGAAGAGGAGGGAGCTGTGGCAGGATTGATAGCAATGATGCGGTGTGGGACACCGAGAGGAAAAGAGAATGCAGTAGCAGCATTGCTCGAGTTATGTCGGAGTGGTGGAGCTGCCACGACTGAGCAGGTGTTCAAGGCTCCTGCATTGGCTGGGTTACTTCAAACGCTCCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTGTTTCAAAGATGTGAGCATGTTGCAATGCATTATGGCGGATTGGGCGTTGGTTATGCCTATGCAAGTAACTCGGCTTCTAACAGGGATTCAAGCTTCACTAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCCGTCGTATAG 2154 46.98 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRLSGKFFFFQRRNSRSLIRKLEVCLVFLDFLKDTDATLPRTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQSISGHFNDLNLELLTFLDVFPLEEVELELDVREQVELLQKQLRRTRMFVDERDEALRTRFLSFLDVFENGRLPNPRELREFFVDKLRIRSAKSCRSEIEFLEEQIVNHEGDVEPTVAVLNSFVAFTRYSRFFLFGFEEDEVESGAGTANQKRLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWLEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWCIADGVPYDPPEGMDASAESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCIRMIEAGAVTALVGALGNEGVAEESAGALALIVRQPIGAKAVSEEEGAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYAYASNSASNRDSSFTSEVSVPISISVPVV 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76649712 76652827 + Tan0019901.1 Tan05g2530 753838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2530 717 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Tan05g2530 717 SMART arm_5 549 587 IPR000225 GO:0005515(InterPro)
Tan05g2530 717 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Tan05g2530 717 SMART arm_5 588 629 IPR000225 GO:0005515(InterPro)
Tan05g2530 717 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515(InterPro)
Tan05g2530 717 FunFam RING-type E3 ubiquitin transferase 366 687 - -
Tan05g2530 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 362 IPR013083 -
Tan05g2530 717 SUPERFAMILY ARM repeat 396 675 IPR016024 -
Tan05g2530 717 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g2530 717 FunFam RING-type E3 ubiquitin transferase 289 364 - -
Tan05g2530 717 SUPERFAMILY RING/U-box 279 362 - -
Tan05g2530 717 Gene3D - 394 669 IPR011989 -
Tan05g2530 717 SMART Ubox_2 293 356 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g2530 717 Coils Coil 212 232 - -
Tan05g2530 717 Pfam U-box domain 290 357 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g2530 717 CDD RING-Ubox_PUB 291 343 IPR045210 -
Tan05g2530 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515(InterPro)
Tan05g2530 717 PANTHER U BOX DOMAIN-CONTAINING 55 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0722 Tan-Chr3:62785984 Tan05g2530 Tan-Chr5:76649712 1.10E-119 dispersed
Tan04g1218 Tan-Chr4:11512502 Tan05g2530 Tan-Chr5:76649712 4.10E-87 dispersed
Tan05g1058 Tan-Chr5:8918421 Tan05g2530 Tan-Chr5:76649712 1.10E-54 dispersed
Tan05g2530 Tan-Chr5:76649712 Tan11g0293 Tan-Chr11:2314913 8.60E-104 dispersed
Tan05g2530 Tan-Chr5:76649712 Tan05g2026 Tan-Chr5:70391221 3.20E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2530 - - - 0.0