Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2539 ATGGTGGCCAAGAGGTTCTTCGTTTTCATTGTTCTTGCGGTGGATTGCTTCATGTTCTTGAGATTTGCAGATTCCAAGCTTCCCCAAGAAGAGGTTGATGCACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCCTGTGCCGTTGAAATGTTTGGAATCACAGAAAAACCTCCGAGGGGATCTGTGAGTAAAATTGTTTGTGATTGCAACCTCGAGAACCGCACAATTTGTCATGTCGTAAGGATAGAATTCAAAAATCACAATCTGCCCGGTGTTCTTCCACCTGAAATTGTCAAACTTCCTTACCTGAAAGAAGTTGATTTAGCTTACAACTACCTTCATGGTAATATACCTCGGGAGTGGGCTTCAATGCGGCTGACATTAATCTCTGTTCTTGTAAATCGGTTATCAGGGGAAATACCAGCGGAATTGGGGAATATTACTACTCTAACGTACCTGACCCTTGAAGCAAACCAATTTACTGGTGCAATTCCATCACAACTTGGGAGGTTAAACAACCTACAAACCTTGATGCTATCATCTAATCAAATGACTGGCACATTGCCAACAACGTTTGCGGGGCTGAAAAATCTAACAGATTTCCGAATGAATGATAACAACCTCAATGGAACCATACCGGACTTCATACAGAATTGGAAACTACTCAGAAGATTAGAACTACATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATATCCCTTTTGAGTAACTTAGAACAGCTGAGGATCAGTGATATTAATGGGCCAAAGCAGGATTTTCCTGAGTTGACAAACATGACACGCATAACGAAATTGGTTCTGAGAAATTGCAACATTGCTGGAAAGATTCCCTCATATGTGTGGATGATACCACCTATGGAAATGCTGGACCTCAGCTTTAACCAGTTGACTGGGGAAGTTCCAGAGGATACGAACTTGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATCTTGAAGGATGGAACTAACGTAGATCTTTCATACAATAACTTAACATGGCAAGGCCCTCAGCAGCATGTTTGTAGAAAGAATATGAATATGAATCTGAACTTGTTTCGAAGTTCTTCCACTGGCAACTCCTCGAGACAGGAAAGTCTCCCCTGCTTGAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCATCAATTCTGGTGGGAATGACTTAACCTTGGAGGTAAACAACAAAAACATTCTCTACAATGGGGATGGAGATGTTGAAGGTGGGACCGCAAAATTCTACATTGATTATGATAGCAACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTATGATTACCAAAATACACGTTACACTTTATCCCTGCCTTCATCAAATTTGTCCGAGCTATATTCAACAGCACGTCGTTGTCCAATTTCTCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGAAGCTTCATTTTGCGGAGTTACAGTTTACAGATGACAAGACATATACTAGTCTTGGAAGACGGAAATTTGATATCTACATTCAGGATAGATTGGTATTGGAGAATTTTGATATTGTAGAGAGGGCGGGAGGAGCTCAAAAACCGACGGAATTGCAGTTTGCTAACATTAGTGTAATTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGGAAAGGGACAACTAGGATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTACTCTGATCTTAAATATTGTTCAATCCGTGAAAGTGGTAAAAATAAAACTGTAGCTATTGTCGTTGGAGTTACGGTTGGATTGTTATGCCTTGCCACAATCATTATAGTGGGACTTCTTTGGTGGAAAGGCACCATTAGAGCATTCAGGCAGAGTAAAGATGGTACAGATCTTGCAGGAATAGAGGTGCAAACTGGAATTTTTACCTTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTCTAATAAAATTGGAGAAGGTGGCTTTGGCCCTGTTTATAAGGGTCAATTGGCTGACGGTACTGTCGTAGCAATTAAGCAGCTCTCATCGAAATCAAAGCAGGGAAATCGTGAATTTCTAAATGAGATAGGATTGATCTCTTGTTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTATTGTTGGTGTATGAATATTTGGAAAACAATTGTCTTGCCCGAGCACTATTTGGTCCAGATCACAGTCGTCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCAAAAGGCTTAGCATATCTCCACGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCAAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGATGATGAGGAGAAGACTCACATCACCACCAGAGTGGCCGGGACCATAGGATATATGGCTCCAGAATATGCACTTTGGGGTTATCTGACCCACAAAGCAGATGTGTATAGCTTTGGAGTTGTGGCCTTGGAAATTATCAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCATGGAGATGGTTGATGAGAAGTTGAGGCCAGAAATCAACTGGAATGAAGCAGAAAACATGGTGAAAATCTCCCTTCTCTGCACCAATGCCTCGCCATCGGTAAGGCCTGCAATGTCGGAAGTGGTGAACATGCTTGAAGGACGAATGGCAATTCCAGACCTGATCCCGGAACCGAGTAGTTATAATGATGATCTGAGGTTCAAGGCGATGAGAGATATGCGTAAAGAGCAACAGAGCCAAAGCCTGAGTGAAAGCCAGACCCAAAATTCCACAATGCAAACGTTTGAGTCTTCAACTACATCTGGAAATGAGTTCTTTGACATCAACCCAGAGCCAAGATCATCAACCTGA 3057 41.38 MVAKRFFVFIVLAVDCFMFLRFADSKLPQEEVDALQQITRTLGAVYWKFNSDSCAVEMFGITEKPPRGSVSKIVCDCNLENRTICHVVRIEFKNHNLPGVLPPEIVKLPYLKEVDLAYNYLHGNIPREWASMRLTLISVLVNRLSGEIPAELGNITTLTYLTLEANQFTGAIPSQLGRLNNLQTLMLSSNQMTGTLPTTFAGLKNLTDFRMNDNNLNGTIPDFIQNWKLLRRLELHASGLQGPIPAKISLLSNLEQLRISDINGPKQDFPELTNMTRITKLVLRNCNIAGKIPSYVWMIPPMEMLDLSFNQLTGEVPEDTNLERIRFLFLSGNMLSGNLPESILKDGTNVDLSYNNLTWQGPQQHVCRKNMNMNLNLFRSSSTGNSSRQESLPCLKDSICSKYSKCWFINSGGNDLTLEVNNKNILYNGDGDVEGGTAKFYIDYDSNWGLSSTGDFMDDYDYQNTRYTLSLPSSNLSELYSTARRCPISLTYFHHCLDNGNYSVKLHFAELQFTDDKTYTSLGRRKFDIYIQDRLVLENFDIVERAGGAQKPTELQFANISVINHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLKYCSIRESGKNKTVAIVVGVTVGLLCLATIIIVGLLWWKGTIRAFRQSKDGTDLAGIEVQTGIFTLKQIKAATNHFDSSNKIGEGGFGPVYKGQLADGTVVAIKQLSSKSKQGNREFLNEIGLISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNCLARALFGPDHSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGKLNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTHKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLMEMVDEKLRPEINWNEAENMVKISLLCTNASPSVRPAMSEVVNMLEGRMAIPDLIPEPSSYNDDLRFKAMRDMRKEQQSQSLSESQTQNSTMQTFESSTTSGNEFFDINPEPRSST 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76713709 76726918 + Tan0015591.1 Tan05g2539 753847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2539 1018 Gene3D Ribonuclease Inhibitor 197 264 IPR032675 -
Tan05g2539 1018 SUPERFAMILY Protein kinase-like (PK-like) 658 949 IPR011009 -
Tan05g2539 1018 ProSiteProfiles Protein kinase domain profile. 676 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2539 1018 MobiDBLite consensus disorder prediction 974 1018 - -
Tan05g2539 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Tan05g2539 1018 Gene3D - 404 600 - -
Tan05g2539 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 386 - -
Tan05g2539 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
Tan05g2539 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2539 1018 SMART serkin_6 676 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2539 1018 SUPERFAMILY L domain-like 82 317 - -
Tan05g2539 1018 Gene3D Ribonuclease Inhibitor 265 386 IPR032675 -
Tan05g2539 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 645 751 - -
Tan05g2539 1018 Pfam Malectin domain 406 594 IPR021720 -
Tan05g2539 1018 Pfam Leucine rich repeat 157 216 IPR001611 GO:0005515(InterPro)
Tan05g2539 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Tan05g2539 1018 Gene3D Phosphorylase Kinase; domain 1 640 751 - -
Tan05g2539 1018 Pfam Protein tyrosine and serine/threonine kinase 679 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2539 1018 CDD STKc_IRAK 682 949 - -
Tan05g2539 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 973 IPR051824 -
Tan05g2539 1018 Gene3D Transferase(Phosphotransferase) domain 1 752 954 - -
Tan05g2539 1018 Gene3D Ribonuclease Inhibitor 31 196 IPR032675 -
Tan05g2539 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 958 - -
Tan05g2539 1018 MobiDBLite consensus disorder prediction 981 1018 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0113 Tan-Chr2:1115083 Tan05g2539 Tan-Chr5:76713709 1.90E-193 dispersed
Tan02g0114 Tan-Chr2:1115083 Tan05g2539 Tan-Chr5:76713709 1.90E-193 dispersed
Tan05g2539 Tan-Chr5:76713709 Tan08g2116 Tan-Chr8:73093997 8.00E-87 dispersed
Tan01g0769 Tan-Chr1:7294172 Tan05g2539 Tan-Chr5:76713709 6.30E-69 transposed
Tan01g0872 Tan-Chr1:8365728 Tan05g2539 Tan-Chr5:76713709 3.70E-83 transposed
Tan01g0913 Tan-Chr1:8678425 Tan05g2539 Tan-Chr5:76713709 2.20E-209 transposed
Tan02g0057 Tan-Chr2:761236 Tan05g2539 Tan-Chr5:76713709 1.30E-137 transposed
Tan05g3265 Tan-Chr5:84662704 Tan05g2539 Tan-Chr5:76713709 1.00E-79 transposed
Tan07g0727 Tan-Chr7:11568141 Tan05g2539 Tan-Chr5:76713709 7.20E-06 transposed
Tan11g2080 Tan-Chr11:44418662 Tan05g2539 Tan-Chr5:76713709 8.10E-109 transposed
Tan02g0214 Tan-Chr2:1862226 Tan05g2539 Tan-Chr5:76713709 1.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67667 PF07714 PK_Tyr_Ser-Thr 3.20E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2539 - - - 0.0