Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2543 ATGGACACGAATACCAATAACAACGGGGTGAGGTTTTTGCTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGAAGGTGGAGGAGGCGGCGGAGGTGGCAGAGGATGGGGAGGAGATCGATCCGGGGGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTTAATTTTCACGATGTTGATAATCGGACGGCGCTTCATATTGCTGCCTGTCAAGGCTACTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTCGCAGATGCTGTATTCTACAAAAACCATAAAGTTATCAAATTGTTGGAAAAAAGCGGCGCAAAACATCTGAAAGCTCCCATGCTTGTCAAGAATGCTCGTGAAGTCCCTGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTAACCAAGGGAACCTTCCATCTAGCATCATGGCGTGGAATCCAAGTTGCAGTCAAAGAGCTTCCCGAGGATGTCATTTCAGAGGAAGATAAAGTGAACGCCTTTAGAGACGAGCTTGCTTTGCTTCAGAAGATTCGACATCCTAACGTAGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCTATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGCCAATTTTTGCAGAGAAAAGGACAGTTAAAACCAATTGTAGCTGTGAAATTTGCCCTCGATATTGCAAGGGGAATGAACTATTTGCACGAAAACAAACCCGCGCCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAGCCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGAGGATAAGCCTCTAACTTGTCAAGGCACTGCTTGCCGATACGTTGCTCCAGAAGTTTTCAAGAACAATGGATACGATACAAAAGTAGACGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGCCAGCCGCCATTTTCAAACAAGAAAGAAAATGCCATTCTTAAAGAGTATGCAGACGGTGTACGTCCAGCTTTCAAAGCTCCAGCTAAATGCTATGCGCATGGAATCAAAGAGTTGATTGAAGATTGCTGGAATGAGAGGCCATCAAAGAGACCAACTTTTAGACAGATAATCACGAGACTGGAAACCATTCATCACAGTCTAAGCCACAGAAGGCGTTGGAAGCTCCCAACGTTGAGATGCTTTCAGAATGCAGAGGCCAAGATAAGAAGAGACCATCTCTCAAGCAGCCGGAGCCTTTCATCGCGATCTGCAAGCAGCATATGA 1377 45.53 MDTNTNNNGVRFLLGKQSSMAPERKVEEAAEVAEDGEEIDPGVRLMYSANEGDLEGIKELLDSGIDVNFHDVDNRTALHIAACQGYSEIVDLLLRRGAEIDPKDRWGSTPLADAVFYKNHKVIKLLEKSGAKHLKAPMLVKNAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLQRKGQLKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGSLKVADFGVSKLLTVKEDKPLTCQGTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYADGVRPAFKAPAKCYAHGIKELIEDCWNERPSKRPTFRQIITRLETIHHSLSHRRRWKLPTLRCFQNAEAKIRRDHLSSSRSLSSRSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76764397 76768291 + Tan0002451.1 Tan05g2543 753851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2543 458 Pfam Protein tyrosine and serine/threonine kinase 170 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2543 458 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Tan05g2543 458 SMART ANK_2a 73 102 IPR002110 GO:0005515(InterPro)
Tan05g2543 458 SMART ANK_2a 106 135 IPR002110 GO:0005515(InterPro)
Tan05g2543 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Tan05g2543 458 Gene3D Transferase(Phosphotransferase) domain 1 234 453 - -
Tan05g2543 458 FunFam Integrin-linked protein kinase family 24 149 - -
Tan05g2543 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515(InterPro)
Tan05g2543 458 ProSiteProfiles Protein kinase domain profile. 123 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2543 458 FunFam serine/threonine-protein kinase STY46-like 151 234 - -
Tan05g2543 458 CDD STKc_MAP3K-like 167 411 - -
Tan05g2543 458 PIRSF ILK 2 433 - -
Tan05g2543 458 SUPERFAMILY Ankyrin repeat 44 132 IPR036770 -
Tan05g2543 458 Gene3D Phosphorylase Kinase; domain 1 157 233 - -
Tan05g2543 458 SUPERFAMILY Protein kinase-like (PK-like) 167 421 IPR011009 -
Tan05g2543 458 FunFam Os01g0748600 protein 144 431 - -
Tan05g2543 458 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515(InterPro)
Tan05g2543 458 Gene3D - 14 147 IPR036770 -
Tan05g2543 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 412 IPR051681 GO:0004674(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1048 Tan-Chr4:9327838 Tan05g2543 Tan-Chr5:76764397 1.20E-84 dispersed
Tan05g2543 Tan-Chr5:76764397 Tan06g2764 Tan-Chr6:79887293 4.60E-42 dispersed
Tan02g1306 Tan-Chr2:38237883 Tan05g2543 Tan-Chr5:76764397 1.20E-98 transposed
Tan03g2619 Tan-Chr3:79250923 Tan05g2543 Tan-Chr5:76764397 5.80E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67668 PF07714 PK_Tyr_Ser-Thr 1.10E-56 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2543 - - - 0.0