Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2545 ATGGATGAGAATTATGAGCTGCTGGCAGTGGCATCTGTTGAACAATCACCACAAAGAAGAACAGGCAGAGGGAAGATTGAAATCAAAAGAATTGAAAACACAACAAATCGTCAAGTTACTTTTTGTAAGAGAAGAAATGGGTTGCTTAAGAAAGCTGATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTCTTGTCTTTTCCACTCGTGGTCGCCTCTATCAATATGCCAACAATAGTGTTAGGGATACAATTTCGAGGTACAAAAAGGCATGTTCTGATCCCTCCAGCGTCGGATCTGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCAGACAAATTGCGAGCTGAAATCGGCAATTTGCAAAAGCTAAACAGGCATTTGTGTGGGGATTCGATAAGTTGTTTGTCCTTTAAGGATCTGAAAAGTCTCGAGGTTAAACTGGAGAAAGGAATTACCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCAGAGATTGAGTACATGCATAAAAGGGAGATTGAACTGCACAATAACAATCAGCTGATACGAGCAAAGATAGCCGAGGCGGAGAGAAGCCAAAAAAACACAACTGCAATGGCGGCAAGAGGAGGAGGATCAGAATCAGAAGCCCCAAATTTTGAGTCTCAACAATACGAATCAAGAAACTACTTTCCCCAAAATCACTTCCCTGGCCATCATCATCATGACCATAATATGTCTCTACAACTCGTGTAG 750 41.87 MDENYELLAVASVEQSPQRRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKADELSVLCDAEVALLVFSTRGRLYQYANNSVRDTISRYKKACSDPSSVGSVSEANAQFYQQESDKLRAEIGNLQKLNRHLCGDSISCLSFKDLKSLEVKLEKGITRIRSRKNELLFAEIEYMHKREIELHNNNQLIRAKIAEAERSQKNTTAMAARGGGSESEAPNFESQQYESRNYFPQNHFPGHHHHDHNMSLQLV 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76781528 76797203 + Tan0007097.1 Tan05g2545 753853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2545 249 MobiDBLite consensus disorder prediction 214 229 - -
Tan05g2545 249 MobiDBLite consensus disorder prediction 234 249 - -
Tan05g2545 249 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 Coils Coil 107 127 - -
Tan05g2545 249 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 FunFam agamous-like MADS-box protein AGL11 33 116 - -
Tan05g2545 249 CDD MADS_MEF2_like 22 95 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan05g2545 249 Gene3D - 33 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 SMART madsneu2 21 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 222 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g2545 249 Pfam K-box region 104 191 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2545 249 SUPERFAMILY SRF-like 22 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2545 249 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2545 249 MobiDBLite consensus disorder prediction 197 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2621 Tan-Chr3:79271000 Tan05g2545 Tan-Chr5:76781528 3.00E-74 dispersed
Tan05g2545 Tan-Chr5:76781528 Tan10g2028 Tan-Chr10:64501337 5.00E-67 dispersed
Tan05g2545 Tan-Chr5:76781528 Tan05g2546 Tan-Chr5:76781528 1.40E-85 tandem
Tan03g2620 Tan-Chr3:79270654 Tan05g2545 Tan-Chr5:76781528 3.00E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27598 PF01486 K-box 5.40E-25 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2545 K09264 - csv:101205366 326.635