Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2546 ATGGATGAGAATTATGAGCTGCTGGCAGTGGCATCTGTTGAACAATCACCACAAAGAAGAACAGGCAGAGGGAAGATTGAAATCAAAAGAATTGAAAACACAACAAATCGTCAAGTTACTTTTTGTAAGAGAAGAAATGGGTTGCTTAAGAAAGCTGATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTCTTGTCTTTTCCACTCGTGGTCGCCTCTATCAATATGCCAACAATAGTGTTAGGGATACAATTTCGAGGTACAAAAAGGCATGTTCTGATCCCTCCAGCGTCGGATCTGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCAGACAAATTGCGAGCTGAAATCGGCAATTTGCAAAAGCTAAACAGGCATTTGTGTGGGGATTCGATAAGTTGTTTGTCCTTTAAGGATCTGAAAAGTCTCGAGGTTAAACTGGAGAAAGGAATTACCCGAATTCGATCCAGAAAGAGATTGAGTACATGCATAAAAGGGAGATTGAACTGCACAATAACAATCAGCTGA 540 40.93 MDENYELLAVASVEQSPQRRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKADELSVLCDAEVALLVFSTRGRLYQYANNSVRDTISRYKKACSDPSSVGSVSEANAQFYQQESDKLRAEIGNLQKLNRHLCGDSISCLSFKDLKSLEVKLEKGITRIRSRKRLSTCIKGRLNCTITIS 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76781528 76797203 + Tan0007097.2 Tan05g2546 753854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2546 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 SUPERFAMILY SRF-like 22 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 Coils Coil 107 127 - -
Tan05g2546 179 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 Pfam K-box region 104 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2546 179 FunFam agamous-like MADS-box protein AGL11 33 116 - -
Tan05g2546 179 CDD MADS_MEF2_like 22 95 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan05g2546 179 ProSiteProfiles K-box domain profile. 107 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g2546 179 SMART madsneu2 21 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 164 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g2546 179 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 Gene3D - 33 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g2546 179 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2546 Tan-Chr5:76781528 Tan10g2028 Tan-Chr10:64501337 1.20E-54 dispersed
Tan05g2545 Tan-Chr5:76781528 Tan05g2546 Tan-Chr5:76781528 1.40E-85 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27599 PF01486 K-box 6.10E-17 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2546 K09264 - csv:101205366 241.891