Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2550 ATGCTGTCATCAAACAACCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTTCTCTCAATGAAGAAGCACGAGATGCTTACATTCTGGGAGAAATCAACAGTTACGATCTCTTCACACTTTCTGGTGATAGTTGTGGGTCATTTAACGAGGAAGAGGTCTTAGAAGGAGTATCAGTGGTAAAAGATATAATTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGCCTTCTAGTTGTAGCAAACAGGTTGCCTGTGTCTGCTGTTAGGAGAGGGAAGGAGACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCCGGACAGAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGATGAGGAGATCGTTCATCAGTATTACAATGGCTATTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTTCCACAAGAAGATCGCCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATACAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCATAATAGTAAGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCACTTTGTTAGTGCCTGCACCCGTATTCTTGGATTGGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGAATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTTCAAGAGAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGCCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACGAGCCAGGTTCATGAGATTGTTGGGCGAATTAATGGGAGATTTGGCACTCTTACTGCAGTTCCAATACATCATCTGGATCGCTCACTTGACTTCCATGCATTATGTGCTTTATATGCTGTCACTGATGTGGCACTAGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCAAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACTACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTGAATGACACCATAGTTGAAGCTCAGATCAGGACCAGACAGATACCACCTTTACTTCCAATAAAAGAGGCAGTAGACAGTTATTCGCGATCACATAATCGGTTGGTTATTCTGGGTTTCAACGTTACCTTAACTGAAGCAGTTGATGCCCTTGGAAGAAGATGTGGCCAAATTAGAGACATGGATCTTAAATTACATCCAGATGTGAGAAGGCCCTTGAAGAAGCTTTGCGATGACCAGAATACGACAGTGGTTGTCCTTAGTGGGAGTGACAGAAGTGTCCTAGATGAGAATTTTGGTGACTACAACATGTGGTTGGCAGCAGAAAATGGAATGTTCTTACGTCCTACGAAGGGCGAATGGATGACGACCATGCCCGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACTGAAAGAACTCCTAGATCCCATTTCGAGCTTCGTGAAACTTCACTGGTGTGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACATGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTTGAACCCGACCTTCCTTCTGAAGTGCCACCTACAACAAGAACAACAGTCACCAATCCCTTCGGAGTACCAGTGCCAAAGATCCCAAACAATGGAGTTCCCCCCAAGTCGGCACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAAAGAAGAGCAAATAGCCATGGCAGTGCAGTGTTTTGGAGGCCTGTAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCCGTGGGGCGGAAGCGATCGAATGCGAGATATCTTCTTGGATCATCAGATGACGTTGTCACACTTGTGAAGGAGTTGTCAGAATGTTCAGATTCAAGTACGAGTTAA 2802 43.08 MLSSNNHNNSPPTPRTRLERLLRERELRRSNRSSSLNEEARDAYILGEINSYDLFTLSGDSCGSFNEEEVLEGVSVVKDIIDGFQRPEGRTSKQRLLVVANRLPVSAVRRGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMQADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIKEAVDSYSRSHNRLVILGFNVTLTEAVDALGRRCGQIRDMDLKLHPDVRRPLKKLCDDQNTTVVVLSGSDRSVLDENFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPTTRTTVTNPFGVPVPKIPNNGVPPKSARLKKQRSLSILERRANSHGSAVFWRPVVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVTLVKELSECSDSSTS 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 76870066 76880629 + Tan0018890.1 Tan05g2550 753858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2550 933 FunFam Alpha,alpha-trehalose-phosphate synthase 619 688 - -
Tan05g2550 933 CDD GT20_TPS 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan05g2550 933 Gene3D - 685 765 - -
Tan05g2550 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 342 544 - -
Tan05g2550 933 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 89 926 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Tan05g2550 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 87 341 - -
Tan05g2550 933 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan05g2550 933 SUPERFAMILY HAD-like 619 922 IPR036412 -
Tan05g2550 933 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Tan05g2550 933 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 685 765 - -
Tan05g2550 933 Gene3D - 619 807 IPR023214 -
Tan05g2550 933 Pfam Trehalose-phosphatase 618 820 IPR003337 GO:0005992(InterPro)
Tan05g2550 933 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Tan05g2550 933 CDD HAD_TPP 593 813 - -
Tan05g2550 933 Gene3D Glycogen Phosphorylase B; 87 341 - -
Tan05g2550 933 Gene3D Glycogen Phosphorylase B; 342 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4257 Tan-Chr1:107334470 Tan05g2550 Tan-Chr5:76870066 0.00E+00 dispersed
Tan01g4258 Tan-Chr1:107334470 Tan05g2550 Tan-Chr5:76870066 0.00E+00 dispersed
Tan05g2550 Tan-Chr5:76870066 Tan09g2228 Tan-Chr9:72247966 8.00E-110 dispersed
Tan05g2550 Tan-Chr5:76870066 Tan02g0192 Tan-Chr2:1658752 2.70E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2550 K16055 - csv:101213690 1716.05