Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2608 ATGGCGGCCACAACCTCAACAATGGCTCTGTCTTCTCCGTCACTGGCCGGAAAGGCAGTGAAACTGACTCCCTCCTCCCCTGAGCTTCTCGGAAACGGCAGAGTCAGCATGAGGAAATCAGCCGCGAAGTCCGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGCCCATTCTCCGGCGAGCCTCCGTCCTACCTGACGGGAGAATTTCCGGGTGACTACGGCTGGGATACTGCCGGACTTTCTGCTGATCCGGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTCATACACTCAAGGTGGGCTATGCTCGGAGCTCTGGGGTGCGTGTTCCCGGAGCTTCTGTCCCGGAACGGCGTGAAGTTCGGGGAAGCGGTGTGGTTCAAGGCCGGTTCTCAGATATTCAGCGAAGGAGGACTCGACTATTTGGGGAACCCAAGCTTGATCCACGCCCAAAGCATTCTTGCCATTTGGGCCTCACAGGTGGTTCTGATGGGCGCCGTCGAAGGATACCGCATCGCCGGAGGCCCACTTGGAGAGATAACCGACCCGATTTACCCGGGTGGGAGTTTTGACCCGTTGGGTCTTGCAGATGACCCGGAAGCATTTGCAGAGTTGAAGGTGAAGGAGTTGAAGAATGGAAGATTGACTATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGTCCACTGGAGAATCTTGCTGACCATCTTGATGATCCAGTCAACAACAATGCCTGGGCTTACGCCACCAACTTTGTTCCTGGAAAATGA 804 55.1 MAATTSTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSAAKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLTMFSMFGFFVQAIVTGKGPLENLADHLDDPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 77367028 77368305 - Tan0009780.1 Tan05g2608 753916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2608 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Tan05g2608 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Tan05g2608 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Tan05g2608 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Tan05g2608 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4459 Tan-Chr1:109927391 Tan05g2608 Tan-Chr5:77367028 8.90E-10 dispersed
Tan05g2608 Tan-Chr5:77367028 Tan10g1823 Tan-Chr10:56891961 8.90E-54 dispersed
Tan05g2608 Tan-Chr5:77367028 Tan05g2609 Tan-Chr5:77376359 1.20E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2608 K08912 - rcu:8289767 521.931