Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2609 ATGGCGGCCACAGCCTCAACAATGGCTCTGTCTTCTCCGTCACTGGCCGGAAAGGCAGTGAAACTGACTCCCTCCTCCCCTGAGCTTCTCGGAAACGGCAGAGTCAGCATGAGGAAATCGGCCGCGAAGTCCGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGCCCATTCTCCGGCGAGCCTCCGTCCTACCTGACGGGAGAATTTCCGGGTGACTACGGCTGGGATACTGCCGGACTTTCTGCTGATCCGGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTCATACACTCAAGGTGGGCTATGCTCGGAGCTCTGGGGTGCGTGTTCCCGGAGCTTCTGTCACGGAACGGCGTGAAGTTCGGGGAAGCGGTGTGGTTCAAGGCCGGTTCTCAGATATTCAGCGAAGGAGGACTCGACTATTTGGGGAACCCAAGCTTGATCCACGCCCAAAGCATTCTTGCCATTTGGGCCTCACAGGTGGTTCTGATGGGCGCCGTCGAAGGATACCGCATCGCCGGAGGTCCACTTGGAGAGATAACCGACCCGATTTACCCGGGTGGGAGTTTCGACCCGTTGGGTCTTGCAGATGACCCGGAAGCATTTGCAGAGTTAAAGGTGAAGGAGTTGAAGAATGGAAGATTGGCAATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTCACTGGAAAGGGTCCACTGGAGAATCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCCTGGGCTTACGCCACCAACTTTGTTCCTGGAAAATGA 804 55.35 MAATASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSAAKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 77376359 77377687 + Tan0010386.1 Tan05g2609 753917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2609 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Tan05g2609 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Tan05g2609 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Tan05g2609 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Tan05g2609 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2667 Tan-Chr3:79732554 Tan05g2609 Tan-Chr5:77376359 5.20E-147 dispersed
Tan03g2668 Tan-Chr3:79737198 Tan05g2609 Tan-Chr5:77376359 8.00E-148 dispersed
Tan04g2344 Tan-Chr4:81912241 Tan05g2609 Tan-Chr5:77376359 7.70E-135 dispersed
Tan05g2609 Tan-Chr5:77376359 Tan10g1823 Tan-Chr10:56891961 1.80E-54 dispersed
Tan05g2608 Tan-Chr5:77367028 Tan05g2609 Tan-Chr5:77376359 1.20E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2609 K08912 - rcu:8289767 523.857