Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2668 ATGGATGGCGGCGCTGGGAGGTCGAAGGCGTCGAGTTCGAACAATGGTGGTAGAACCCGCGTTGGAAAATACGAGTTGGGTAGAACCCTAGGCGAGGGCAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCGGAGACCGGCGAGAACGTGGCGATTAAAATTCTTGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATATCAACAATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGCTGGAGTTTGTCACTGGTGGGGAATTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCGGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGACTTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGTGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTGCTTCACACAACGTGTGGGACACCAAATTATGTTGCTCCAGAGGTGATTAATAACAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAATGCAAAGAAACTAATTAATAGAATTTTGGATCCCAATCCCTCAACGAGAATTACCATTCCCGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATTAGTCTTGATGATGTAGATGCTATCTTCGATGAAACAGGGGATTCGGGTAGTCTCGTTGTGGAAAGGAAAGACGAAGGGCCTACTGCCCCTCTTACAATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGTCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGGGAGACGAGGTTCACATCCAATCGACCTGCAAAAGAGATTCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGGGGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGTCATTTATCAGTTGCTACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACCGGGCTGAAAGACATTGTCTGGAAACATGAAGGGGATGCAGATGAAGATAGTGATGCAAGTGCCTCGCAGGCGAGGTAA 1392 42.67 MDGGAGRSKASSSNNGGRTRVGKYELGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLINRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFDETGDSGSLVVERKDEGPTAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEGDADEDSDASASQAR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 78077264 78084976 + Tan0003223.1 Tan05g2668 753976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2668 463 Gene3D Transferase(Phosphotransferase) domain 1 18 320 - -
Tan05g2668 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2668 463 CDD STKc_SnRK3 23 278 - -
Tan05g2668 463 CDD CIPK_C 327 442 - -
Tan05g2668 463 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Tan05g2668 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan05g2668 463 FunFam Non-specific serine/threonine protein kinase 17 319 - -
Tan05g2668 463 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Tan05g2668 463 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Tan05g2668 463 MobiDBLite consensus disorder prediction 1 23 - -
Tan05g2668 463 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2668 463 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Tan05g2668 463 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Tan05g2668 463 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2668 463 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2668 463 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Tan05g2668 463 Gene3D Kinase associated domain 1, KA1 321 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2668 Tan-Chr5:78077264 Tan07g0616 Tan-Chr7:9675988 7.40E-181 dispersed
Tan05g2668 Tan-Chr5:78077264 Tan05g2669 Tan-Chr5:78077264 2.90E-217 tandem
Tan02g0879 Tan-Chr2:9897843 Tan05g2668 Tan-Chr5:78077264 5.30E-57 transposed
Tan02g2506 Tan-Chr2:93633492 Tan05g2668 Tan-Chr5:78077264 1.10E-149 transposed
Tan03g1836 Tan-Chr3:73904194 Tan05g2668 Tan-Chr5:78077264 1.60E-55 transposed
Tan06g2817 Tan-Chr6:80264138 Tan05g2668 Tan-Chr5:78077264 3.50E-119 transposed
Tan07g1108 Tan-Chr7:36484828 Tan05g2668 Tan-Chr5:78077264 1.10E-54 transposed
Tan07g1124 Tan-Chr7:38064942 Tan05g2668 Tan-Chr5:78077264 3.20E-54 transposed
Tan09g1415 Tan-Chr9:66275846 Tan05g2668 Tan-Chr5:78077264 2.10E-145 transposed
Tan10g0068 Tan-Chr10:1022351 Tan05g2668 Tan-Chr5:78077264 1.80E-181 transposed
Tan10g1130 Tan-Chr10:10956116 Tan05g2668 Tan-Chr5:78077264 1.70E-121 transposed
Tan03g2727 Tan-Chr3:80210878 Tan05g2668 Tan-Chr5:78077264 1.20E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67669 PF00069 Pkinase 1.00E-74 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2668 - - - 0.0