Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2669 ATGGCTAGCAAGACCAAAATATATATTGTGCTGGAGTTTGTCACTGGTGGGGAATTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCGGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGACTTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGTGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTGCTTCACACAACGTGTGGGACACCAAATTATGTTGCTCCAGAGGTGATTAATAACAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAATGCAAAGAAACTAATTAATAGAATTTTGGATCCCAATCCCTCAACGAGAATTACCATTCCCGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATTAGTCTTGATGATGTAGATGCTATCTTCGATGAAACAGGGGATTCGGGTAGTCTCGTTGTGGAAAGGAAAGACGAAGGGCCTACTGCCCCTCTTACAATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGTCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGGGAGACGAGGTTCACATCCAATCGACCTGCAAAAGAGATTCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGGGGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGTCATTTATCAGTTGCTACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACCGGGCTGAAAGACATTGTCTGGAAACATGAAGGGGATGCAGATGAAGATAGTGATGCAAGTGCCTCGCAGGCGAGGTAA 1122 41.44 MASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLINRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFDETGDSGSLVVERKDEGPTAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEGDADEDSDASASQAR 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 78077264 78084976 + Tan0003223.2 Tan05g2669 753977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2669 373 SMART serkin_6 1 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2669 373 Gene3D Transferase(Phosphotransferase) domain 1 1 231 - -
Tan05g2669 373 CDD CIPK_C 237 352 - -
Tan05g2669 373 ProSiteProfiles NAF domain profile. 231 255 IPR018451 GO:0007165(InterPro)
Tan05g2669 373 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g2669 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g2669 373 SUPERFAMILY Protein kinase-like (PK-like) 4 200 IPR011009 -
Tan05g2669 373 FunFam Non-specific serine/threonine protein kinase 230 356 - -
Tan05g2669 373 Pfam NAF domain 233 293 IPR004041 GO:0007165(InterPro)
Tan05g2669 373 FunFam Non-specific serine/threonine protein kinase 14 196 - -
Tan05g2669 373 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 344 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan05g2669 373 Gene3D Kinase associated domain 1, KA1 232 356 - -
Tan05g2669 373 Pfam Protein kinase domain 2 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2669 Tan-Chr5:78077264 Tan10g0068 Tan-Chr10:1022351 2.70E-149 dispersed
Tan05g2668 Tan-Chr5:78077264 Tan05g2669 Tan-Chr5:78077264 2.90E-217 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67670 PF00069 Pkinase 1.00E-53 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2669 - - - 0.0