Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2676 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGGCTCCTGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTCCCGGCTGTTGGCAGTCGGGTTGTGTATTTTCCTCAAGGTCACAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCTCAGATCCCAAATTACCCGAGTTTACCGCCGCAACTCATCTGTCAACTTCACAACCTAACTATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTTTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCAGAAAAAGTATTTCCCCCTTTGGACTTCTCCATGCAGCCCCCAGCTCAAGAGCTGATTGCGAGGGACCTACATGACAATGAGTGGAAATTCAGACATATTTTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGCGCTAAAAGACTTGTAGCTGGTGATGCTGTGCTTTTTATCTGGAATGAAAAGAATCAATTGCTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCCGTTTTGTCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCAGCTCATGCAGCTGCTACCAATAGTCGGTTTACCATATTTTTTAACCCAAGGGCTAGTCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTGTACCATACTCGTGTTTCTGTTGGGATGCGCTTTAGGATGCTGTTTGAGACGGAAGAATCAAGTGTTCGTCGCTACATGGGAACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAATTCACATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCAACGGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAACCGTTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCATGGCCAACTGGACTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGTGGCATCCAGTGTCTAAACTTCCAGGGAGCTGGGGTCTCACCATGGATGCATCCGAGGCTTGATACATCCATGATTGGTATGCAATCTGATGTGTATCAAGCCATGGCTGCTGCAGCTCTTCAGGAGATGAGGGCAATCGATTATTCCAAAATAGCACCTGCGTCTATTCTGCAATTCCAGCAGCCCCAAGGCCTCCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGTGTTTCTGCAGCCCGTTCATGAAAATCAGCAGCATTCTCAGTCTCAGGCTCAGGTTCAGGCTCATACTCAGTCACATCATCTTCAGCCACAATTGCAGCCCCAGCAGTCGTTCAATAATCAACAACAGCAGCATCAACAGCAACCAAGGCAGCCACAGCCACTGGTTGATCATCAACCGGTTCCTTGTACAATCCCTGCAATATCTCAGTTTGCTTCATGTTCACAATCCCAGTCACTGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAATCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCAGGGTCATTTGTCCAAGATGAATCGTCTCAGCTGCTTAACCTTCAAAGAGCAAATTCAATAATTCCTTCAGCTGGCTGGCCATCAAAGAGAGCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCCGTATTTTTTACCTCAGGTGGAAAATTTGGGAACATCACAGAGTAGTATTTCTCAGAATACAGTTGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTATTGATGATCGAGATGAGGGTTCTGATCCACAAAACCATGTTTTGTTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAACTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACGATGACGTCCTCAAATTGCATTGATGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGGCAAGTAAACCCACAGAATGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAACTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGTGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGGGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTATGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGAAATGGGGAAACGAGGCTTAGAACTTCTCAACTCTGTGCCAATCCAGAGGCTCTCGAATAGCACCTGTGACGACTACGGTAGCCGACAGGATTCGAGAAATTTGATTTCAGGGATAACCTCTGTTGGGCCTCTCGACTACTGA 2718 47.57 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMHPRLDTSMIGMQSDVYQAMAAAALQEMRAIDYSKIAPASILQFQQPQGLPCQSSTLMQPQMLHQSQPQQVFLQPVHENQQHSQSQAQVQAHTQSHHLQPQLQPQQSFNNQQQQHQQQPRQPQPLVDHQPVPCTIPAISQFASCSQSQSLSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDESSQLLNLQRANSIIPSAGWPSKRAAIDPLSTGASPYFLPQVENLGTSQSSISQNTVALPPFPGRECSIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNPQNGTFVKVHKSGTYSRSLDITKFNNYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 78180676 78187402 - Tan0020249.1 Tan05g2676 753984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2676 905 ProSiteProfiles PB1 domain profile. 772 856 IPR053793 -
Tan05g2676 905 FunFam Auxin response factor 767 861 - -
Tan05g2676 905 Gene3D - 125 228 IPR015300 -
Tan05g2676 905 Gene3D - 291 363 - -
Tan05g2676 905 FunFam Auxin response factor 291 363 - -
Tan05g2676 905 MobiDBLite consensus disorder prediction 498 546 - -
Tan05g2676 905 SUPERFAMILY CAD & PB1 domains 762 847 - -
Tan05g2676 905 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Tan05g2676 905 MobiDBLite consensus disorder prediction 498 553 - -
Tan05g2676 905 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Tan05g2676 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 863 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g2676 905 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Tan05g2676 905 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g2676 905 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Tan05g2676 905 Gene3D - 769 861 - -
Tan05g2676 905 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Tan05g2676 905 FunFam Auxin response factor 125 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4996 Tan-Chr1:115689728 Tan05g2676 Tan-Chr5:78180676 1.00E-173 dispersed
Tan05g2676 Tan-Chr5:78180676 Tan08g0912 Tan-Chr8:12853855 1.10E-167 dispersed
Tan03g2736 Tan-Chr3:80297074 Tan05g2676 Tan-Chr5:78180676 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27606 PF02309 AUX_IAA 3.20E-07 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2676 K14486 - csv:101211705 1608.58