Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2704 ATGAGTCATTTTCCGGTGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCATCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACACATATCAAAGGTCTTATCAATGACATTGGATGAATGGACTGATGATGAGATAAATGCGATGATAGAGGTAGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGATGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTGTATCCAATAACTCCTCAAAGAGTCCTGAGGAGCCAAGTTATTTTCAAGAGATTGCCGATAGCTTTCGAAGCTCAAACTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATCCTTTCATTGCCGTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCAACTTGAATCCAATTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAGGAATACGGACCCTTGAAGTTGGAAGTGTTCGATCACGACGTAATTTCAGCTAATGACTTAATGGGTGAAGCAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTGAAATATTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAACGCCCTTATCGACGACAGTGCTGTCAATATCGTCGATGGGAAGGTGGTACAAGAGGTATCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAAGAATAA 1005 41.59 MSHFPVDFRRPESAKSRLKDLLHQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSMTLDEWTDDEINAMIEVGGNGSANAIYEAFIPDGYTKPGPSASHEERSKFIRSKYELQEFLKPSLRIVSNNSSKSPEEPSYFQEIADSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFIAVTLGQQTAKTTVIKSNLNPIWNEELMLSVPQEYGPLKLEVFDHDVISANDLMGEAEIDLQPMITSAMAFGDAEIFENMQIGKWLKSDDNALIDDSAVNIVDGKVVQEVSLKLQNVESGEVYLELEWMPLDQE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 78894888 78898452 + Tan0005411.1 Tan05g2704 754012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2704 334 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Tan05g2704 334 Gene3D C2 domain 175 334 IPR035892 -
Tan05g2704 334 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Tan05g2704 334 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Tan05g2704 334 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Tan05g2704 334 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Tan05g2704 334 ProSiteProfiles C2 domain profile. 160 276 IPR000008 -
Tan05g2704 334 SMART C2_3c 178 273 IPR000008 -
Tan05g2704 334 CDD ArfGap 18 124 - -
Tan05g2704 334 CDD C2_ArfGAP 177 320 - -
Tan05g2704 334 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Tan05g2704 334 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Tan05g2704 334 Pfam C2 domain 177 264 IPR000008 -
Tan05g2704 334 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Tan05g2704 334 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Tan05g2704 334 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Tan05g2704 334 Gene3D Arf GTPase activating protein 6 136 IPR038508 -
Tan05g2704 334 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1849 Tan-Chr5:62810504 Tan05g2704 Tan-Chr5:78894888 4.30E-14 dispersed
Tan05g2151 Tan-Chr5:72251874 Tan05g2704 Tan-Chr5:78894888 9.40E-22 dispersed
Tan05g2152 Tan-Chr5:72251874 Tan05g2704 Tan-Chr5:78894888 9.40E-22 dispersed
Tan05g2189 Tan-Chr5:72792891 Tan05g2704 Tan-Chr5:78894888 2.80E-33 dispersed
Tan05g2704 Tan-Chr5:78894888 Tan11g1555 Tan-Chr11:14351095 3.20E-93 dispersed
Tan10g1458 Tan-Chr10:20009622 Tan05g2704 Tan-Chr5:78894888 3.90E-17 transposed
Tan03g2784 Tan-Chr3:80845673 Tan05g2704 Tan-Chr5:78894888 9.10E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2704 K12486 - csv:101211569 593.193