Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2710 ATGTCTTTGCTCCGACCTTACGGTAAGGTCGACGAAACCGACCTACTGAGGCTCGACGCTAGCCGGAGGACTCGGAGGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTATTGTTGTTGCTGTTGTGTTTGGGACTAGAAATGGTTCCAACAATGATGACACTAACAATAATCACAATGATGCTCTTTCAACTTCCATCAAAGCAGTTTGTGATGTGACTTTGTATCCTGATACTTGTTACAATACTTTTGCTCCTCTTGCTAACTCGAGCCACCTCGACCCGGGCCAGATCTCCAAGTTTTCGGTTCAACTCGCGCTAGGAGAACTGTCGCGAGTAGTTGACTACATTTTTGAGCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGAAAAGTTGTCATGAACTTTTGGATTTGGCAATTGATCATTTGAATATCTCATTGTCTTCTAGTGAGATTACATTGCTGAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTATCAGCAGACTTGCATCGACGACCTTAAGGATGTCGATCCGGCATTGACGAACATCATTGAGAATTACTTGAAGAACTCCACTGAAATGACCAGCAATGGCCTTGCCATTGTGTCCTTCTTTTCCAAGCTTACGGATTCTTTCAATCTAAGACGGTTGATGAGTTATGAAGATCGCCAAAGCAATGGAGATTGGGCACATCCGATACTCCGAAAGCTAGCTCAGAAAGATCTCAGGAAGCAGGCCAACATTGTCGTAGCGACAGACGGTTCGGGGAAGTACAAAACAATCACTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAGGGAACTTATAAGGAGAATGTTGAAGTTGTGAAGAACAAATGGAATGTGGTGATGATTGGTGATGGAATGACTGTAACCACAGTAACTGGCAGCCTCAACTTCATAGATGGGACTCCAACATTTTCAAGTGCAACATTTGCTGCTAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACAGCTGGACCGAGCAAACACCAGGCAGTCGCTCTGATGTCGACATCCGACCAATCGATCTTCTACCGCTGCGAAATGGATGCATACCAAGACACTCTCTACGCGCATTCCAACCGCCAATTCTACCGTGAATGCAAGATTTCCGGCACGGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCACCATTGCTCCGAGGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCACAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCTATACAAGACTCTTTGATCCAACCGTTCGAAAACTTGAAAACGACCGAAACTTACCTCGGTCGACCGTGGAAGAACTACTCGACGACCGTGTTTATGCAGAGCAATTTGGGGAGCTTGATTCACCCAACTGGCTGGCTGCCTTGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAAAAGAGTCAAATGGAAGGGAGTGAAGAACATTGACATCAAAACTGCCAAAAAGTTCACAGTTTCCTCTTTCATTGATGGTAAAGATTGGATCTCAAATGCACAAGTCCCCTTCAAAGCCACCCTTTGA 1704 44.72 MSLLRPYGKVDETDLLRLDASRRTRRRIAVIVLSSVVLVGIVVAVVFGTRNGSNNDDTNNNHNDALSTSIKAVCDVTLYPDTCYNTFAPLANSSHLDPGQISKFSVQLALGELSRVVDYIFEHAITNSTDNKTILALKSCHELLDLAIDHLNISLSSSEITLLKAVDDLKTWLTSAATYQQTCIDDLKDVDPALTNIIENYLKNSTEMTSNGLAIVSFFSKLTDSFNLRRLMSYEDRQSNGDWAHPILRKLAQKDLRKQANIVVATDGSGKYKTITAALKAVPDKSKKRTVIYVKKGTYKENVEVVKNKWNVVMIGDGMTVTTVTGSLNFIDGTPTFSSATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCEMDAYQDTLYAHSNRQFYRECKISGTVDFIFGNSAVVLQNCTIAPRLPLLGQKNTITAQGRFDPNQNTGISIQDSLIQPFENLKTTETYLGRPWKNYSTTVFMQSNLGSLIHPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGVKNIDIKTAKKFTVSSFIDGKDWISNAQVPFKATL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 78979028 78980911 + Tan0019933.1 Tan05g2710 754018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2710 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan05g2710 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Tan05g2710 567 PANTHER PECTINESTERASE 27 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan05g2710 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Tan05g2710 567 FunFam Pectinesterase 255 567 - -
Tan05g2710 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Tan05g2710 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Tan05g2710 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Tan05g2710 567 Gene3D - 256 567 IPR012334 -
Tan05g2710 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Tan05g2710 567 SUPERFAMILY Pectin lyase-like 259 565 IPR011050 -
Tan05g2710 567 NCBIfam pectinesterase inhibitor domain 53 216 IPR006501 GO:0004857(InterPro)
Tan05g2710 567 FunFam Pectinesterase 66 220 - -
Tan05g2710 567 CDD PMEI-like_3 72 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2837 Tan-Chr4:87782835 Tan05g2710 Tan-Chr5:78979028 6.20E-129 dispersed
Tan05g2710 Tan-Chr5:78979028 Tan06g2699 Tan-Chr6:79431027 8.30E-110 dispersed
Tan05g2710 Tan-Chr5:78979028 Tan10g1033 Tan-Chr10:9186330 2.00E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2710 - - - 0.0