Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2760 ATGGACCAGAATAAATTGGGAGCAGATTCTCATGCAAAAGGGGATTATTCTTCCAAGGGTAGTCATAAAAGTAACCAGACTGTTGAGAAGTTAGGAAGTCCTCAGCATCAGAAGATTTCAGCTAGATGGCACCCGGAAGAAGCGTGCAGGCCTTTAATTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGATACATAGCTAAAATTCGTCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGTGTTCTCAAAGAGAAATGTATATGGGAAAATGCCAAGTTTTCTACTCGTATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGCCGAAAACGCAAGCGAAGGAAGCACTCAAAAGCAGGGACATCAGCTAGAAGCACCAATCTTGGTGTAGAAGCAAACGCTACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGATTTCACTCTCAAAGAATTCCAGGCACGTGCAGATAATTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATACCGAATCTAGCAAGAGAAGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTATAGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTGGCAGTGGCTTTCCCAAGGTCTCATCCATGGTTACTGAAGGAAATTCAGATCCGTATGTAAAGTCGGGTTGGAATCTTAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCCGGAGTTCTAGTTCCATGGCTCTATGTTGGAATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGATCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTGTGGTATGGAGTTCCTGGAAGCCACGCGCCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTTCTCAAATCTGAAGGAGTACCTGTGTATCGAGTAGTCCAGAATTCCAGGGAGTTCGTTCTTACCTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTAACTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAATTGTTATTTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTAGAAAAGAAAACTCCAAGTAATCAAAGATGGAAAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAGAGAGAGTGTTATGCCTGCTTTTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGATGACAGGTGTGTGCTCTTTCGCTACAGTATAAATGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAAAAGGACAATGAATCTGTAGCTAAGGTGAAGTTGGACAGCGGATTAATTGAAAAACCATCTTGGTCCCCAGAAATAATAGATAAGCTAAAAAGAACAGACGTCCCATGCAGTTCATCTAGTCACGCTTCTTCAGAAGTAGTGCAGTCAGAGTCTCACCGAGGATCGCTTAGTTTGAATACTTCCCACCTTAGTTCAGATAGTCAGAATGACATTGTAAACAGTGAAGTTATGGTAATAAATAAAGAAGAGAAGGTGGGGCAGGAGAGCTGCATTGATTTGAACCTTGAAATAATTTCTGATGAGAACGGTAGTTGTGGGCCTCACAAATCTGATGGCAAGATAATCATTGATTTGGAGGAAACGTACACTTCGTTGTTTGAAGAAAAAGACGTTTGTAAAGCAGCACGTGAATCAGATTTAATGGAACTCGACACTAATCATGTAAACACTTCTCCGGTTAATGGAACGATAGGTGTGAGAATGTGTGGATCTAATGGTAGTAAGTTGTTTGGAGTTGATCTTTCACAGTCGCAGTCAGCATTTCCATCTAACAATTCCTCAAAAGTAGAAACTCTAAAACACTTGGATAAAAGGATACCATCTTGGCCAAGTTCTCCTTGGAATTTGGTTCCTTCTGTTGAACCTATAAATATTGGAACAATTATGTTTGGAAAGCCTTGGCACTGCAAGAAGGCCATATTTCCAAAAGGTTTTAGAAGCCGAGTGAAATTCTTTAGTGTACTTAATCCAACTAGTATTGTTACCTACACATCAGAAGTTCTTGATGGTGGGCTCCTGGGACCTCTATTCAAGGTGGCATTGGAAGAATCTCCCAGTGTGAACTTCACTAATGCTTCAGCAACCAAATGCTGGGGCATGGTAGTACAGAGATTAAACCAAGAAATCGAAAGACAGAACCTTAGATTGGGAGGAACAGCTCCTTTGCAGCTTTTGGAGGAAGTTAATGGACTTGAAATGTTTGGATTTCTTTCACCTCACGTTATTCAGGCTATCGAGGCCCTTGATCCTAAACACCAGTGTATGGAGTATTGGAACCACCGGCATCATGGCTTACCCGAAAATTCAGGGAAGAGGATGAGAATGTCAATCCAACTATAG 2901 41.3 MDQNKLGADSHAKGDYSSKGSHKSNQTVEKLGSPQHQKISARWHPEEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPPSWNPPCVLKEKCIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKHSKAGTSARSTNLGVEANATSESDEKFGFNSGSDFTLKEFQARADNFKECYFGIKQAQEDLNFDTESSKRREPSVEDIEGEYWRIVEKSIDEVEVYYGADIESATFGSGFPKVSSMVTEGNSDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLTHGQNAVELYSAQRHRTSLSHDKLLFGSAREAAQALWELLVLEKKTPSNQRWKSVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKLQKMESEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCKMEKDNESVAKVKLDSGLIEKPSWSPEIIDKLKRTDVPCSSSSHASSEVVQSESHRGSLSLNTSHLSSDSQNDIVNSEVMVINKEEKVGQESCIDLNLEIISDENGSCGPHKSDGKIIIDLEETYTSLFEEKDVCKAARESDLMELDTNHVNTSPVNGTIGVRMCGSNGSKLFGVDLSQSQSAFPSNNSSKVETLKHLDKRIPSWPSSPWNLVPSVEPINIGTIMFGKPWHCKKAIFPKGFRSRVKFFSVLNPTSIVTYTSEVLDGGLLGPLFKVALEESPSVNFTNASATKCWGMVVQRLNQEIERQNLRLGGTAPLQLLEEVNGLEMFGFLSPHVIQAIEALDPKHQCMEYWNHRHHGLPENSGKRMRMSIQL 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 79664890 79674144 - Tan0018211.2 Tan05g2760 754068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2760 966 Pfam F/Y rich C-terminus 861 950 IPR003889 GO:0005634(InterPro)
Tan05g2760 966 SMART JmjN_1 55 96 IPR003349 -
Tan05g2760 966 Pfam F/Y-rich N-terminus 806 857 IPR003888 GO:0005634(InterPro)
Tan05g2760 966 Gene3D Cupin 41 414 - -
Tan05g2760 966 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Tan05g2760 966 ProSiteProfiles FYR domain FYRN motif profile. 799 857 IPR003888 GO:0005634(InterPro)
Tan05g2760 966 SMART cupin_9 264 430 IPR003347 -
Tan05g2760 966 SMART fyrc_3 863 955 IPR003889 GO:0005634(InterPro)
Tan05g2760 966 MobiDBLite consensus disorder prediction 19 34 - -
Tan05g2760 966 MobiDBLite consensus disorder prediction 1 42 - -
Tan05g2760 966 ProSiteProfiles FYR domain FYRC motif profile. 859 949 IPR003889 GO:0005634(InterPro)
Tan05g2760 966 SUPERFAMILY Clavaminate synthase-like 261 458 - -
Tan05g2760 966 PANTHER LYSINE-SPECIFIC DEMETHYLASE 40 729 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Tan05g2760 966 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Tan05g2760 966 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Tan05g2760 966 MobiDBLite consensus disorder prediction 128 145 - -
Tan05g2760 966 MobiDBLite consensus disorder prediction 120 159 - -
Tan05g2760 966 MobiDBLite consensus disorder prediction 628 661 - -
Tan05g2760 966 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Tan05g2760 966 SMART fyrn_3 813 857 IPR003888 GO:0005634(InterPro)
Tan05g2760 966 Gene3D - 804 942 - -
Tan05g2760 966 Pfam jmjN domain 57 90 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2760 K11446 - - csv:101214856 1660.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2760 Tan-Chr5:79664890 Tan05g2762 Tan-Chr5:79664890 0.00E+00 dispersed
Tan05g2759 Tan-Chr5:79664890 Tan05g2760 Tan-Chr5:79664890 0.00E+00 tandem
Tan05g2760 Tan-Chr5:79664890 Tan05g2761 Tan-Chr5:79664890 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1011 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan08g1009 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan08g1010 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan05g2759 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2762 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2763 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2760 . 28 948 JUMONJI Transcription Factor Family AT1G30810 51.2 3.4e-245 845.5
Tan05g2761 . 28 948 JUMONJI Transcription Factor Family AT1G30810 51.2 3.4e-245 845.5
Tan05g2760 . 64 948 JUMONJI Transcription Factor Family AT4G20400 51.5 3.5e-243 839.0
Tan05g2761 . 64 948 JUMONJI Transcription Factor Family AT4G20400 51.5 3.5e-243 839.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27613 PF02373 JmjC 2.80E-45 CL0029 Tan TR