Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2760 ATGGACCAGAATAAATTGGGAGCAGATTCTCATGCAAAAGGGGATTATTCTTCCAAGGGTAGTCATAAAAGTAACCAGACTGTTGAGAAGTTAGGAAGTCCTCAGCATCAGAAGATTTCAGCTAGATGGCACCCGGAAGAAGCGTGCAGGCCTTTAATTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGATACATAGCTAAAATTCGTCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGTGTTCTCAAAGAGAAATGTATATGGGAAAATGCCAAGTTTTCTACTCGTATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGCCGAAAACGCAAGCGAAGGAAGCACTCAAAAGCAGGGACATCAGCTAGAAGCACCAATCTTGGTGTAGAAGCAAACGCTACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGATTTCACTCTCAAAGAATTCCAGGCACGTGCAGATAATTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATACCGAATCTAGCAAGAGAAGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTATAGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTGGCAGTGGCTTTCCCAAGGTCTCATCCATGGTTACTGAAGGAAATTCAGATCCGTATGTAAAGTCGGGTTGGAATCTTAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCCGGAGTTCTAGTTCCATGGCTCTATGTTGGAATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGATCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTGTGGTATGGAGTTCCTGGAAGCCACGCGCCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTTCTCAAATCTGAAGGAGTACCTGTGTATCGAGTAGTCCAGAATTCCAGGGAGTTCGTTCTTACCTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTAACTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAATTGTTATTTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTAGAAAAGAAAACTCCAAGTAATCAAAGATGGAAAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAGAGAGAGTGTTATGCCTGCTTTTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGATGACAGGTGTGTGCTCTTTCGCTACAGTATAAATGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAAAAGGACAATGAATCTGTAGCTAAGGTGAAGTTGGACAGCGGATTAATTGAAAAACCATCTTGGTCCCCAGAAATAATAGATAAGCTAAAAAGAACAGACGTCCCATGCAGTTCATCTAGTCACGCTTCTTCAGAAGTAGTGCAGTCAGAGTCTCACCGAGGATCGCTTAGTTTGAATACTTCCCACCTTAGTTCAGATAGTCAGAATGACATTGTAAACAGTGAAGTTATGGTAATAAATAAAGAAGAGAAGGTGGGGCAGGAGAGCTGCATTGATTTGAACCTTGAAATAATTTCTGATGAGAACGGTAGTTGTGGGCCTCACAAATCTGATGGCAAGATAATCATTGATTTGGAGGAAACGTACACTTCGTTGTTTGAAGAAAAAGACGTTTGTAAAGCAGCACGTGAATCAGATTTAATGGAACTCGACACTAATCATGTAAACACTTCTCCGGTTAATGGAACGATAGGTGTGAGAATGTGTGGATCTAATGGTAGTAAGTTGTTTGGAGTTGATCTTTCACAGTCGCAGTCAGCATTTCCATCTAACAATTCCTCAAAAGTAGAAACTCTAAAACACTTGGATAAAAGGATACCATCTTGGCCAAGTTCTCCTTGGAATTTGGTTCCTTCTGTTGAACCTATAAATATTGGAACAATTATGTTTGGAAAGCCTTGGCACTGCAAGAAGGCCATATTTCCAAAAGGTTTTAGAAGCCGAGTGAAATTCTTTAGTGTACTTAATCCAACTAGTATTGTTACCTACACATCAGAAGTTCTTGATGGTGGGCTCCTGGGACCTCTATTCAAGGTGGCATTGGAAGAATCTCCCAGTGTGAACTTCACTAATGCTTCAGCAACCAAATGCTGGGGCATGGTAGTACAGAGATTAAACCAAGAAATCGAAAGACAGAACCTTAGATTGGGAGGAACAGCTCCTTTGCAGCTTTTGGAGGAAGTTAATGGACTTGAAATGTTTGGATTTCTTTCACCTCACGTTATTCAGGCTATCGAGGCCCTTGATCCTAAACACCAGTGTATGGAGTATTGGAACCACCGGCATCATGGCTTACCCGAAAATTCAGGGAAGAGGATGAGAATGTCAATCCAACTATAG 2901 41.3 MDQNKLGADSHAKGDYSSKGSHKSNQTVEKLGSPQHQKISARWHPEEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPPSWNPPCVLKEKCIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKHSKAGTSARSTNLGVEANATSESDEKFGFNSGSDFTLKEFQARADNFKECYFGIKQAQEDLNFDTESSKRREPSVEDIEGEYWRIVEKSIDEVEVYYGADIESATFGSGFPKVSSMVTEGNSDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLTHGQNAVELYSAQRHRTSLSHDKLLFGSAREAAQALWELLVLEKKTPSNQRWKSVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKLQKMESEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCKMEKDNESVAKVKLDSGLIEKPSWSPEIIDKLKRTDVPCSSSSHASSEVVQSESHRGSLSLNTSHLSSDSQNDIVNSEVMVINKEEKVGQESCIDLNLEIISDENGSCGPHKSDGKIIIDLEETYTSLFEEKDVCKAARESDLMELDTNHVNTSPVNGTIGVRMCGSNGSKLFGVDLSQSQSAFPSNNSSKVETLKHLDKRIPSWPSSPWNLVPSVEPINIGTIMFGKPWHCKKAIFPKGFRSRVKFFSVLNPTSIVTYTSEVLDGGLLGPLFKVALEESPSVNFTNASATKCWGMVVQRLNQEIERQNLRLGGTAPLQLLEEVNGLEMFGFLSPHVIQAIEALDPKHQCMEYWNHRHHGLPENSGKRMRMSIQL 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 79664890 79674144 - Tan0018211.2 Tan05g2760 754068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2760 966 Pfam F/Y rich C-terminus 861 950 IPR003889 GO:0005634(InterPro)
Tan05g2760 966 SMART JmjN_1 55 96 IPR003349 -
Tan05g2760 966 Pfam F/Y-rich N-terminus 806 857 IPR003888 GO:0005634(InterPro)
Tan05g2760 966 Gene3D Cupin 41 414 - -
Tan05g2760 966 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Tan05g2760 966 ProSiteProfiles FYR domain FYRN motif profile. 799 857 IPR003888 GO:0005634(InterPro)
Tan05g2760 966 SMART cupin_9 264 430 IPR003347 -
Tan05g2760 966 SMART fyrc_3 863 955 IPR003889 GO:0005634(InterPro)
Tan05g2760 966 MobiDBLite consensus disorder prediction 19 34 - -
Tan05g2760 966 MobiDBLite consensus disorder prediction 1 42 - -
Tan05g2760 966 ProSiteProfiles FYR domain FYRC motif profile. 859 949 IPR003889 GO:0005634(InterPro)
Tan05g2760 966 SUPERFAMILY Clavaminate synthase-like 261 458 - -
Tan05g2760 966 PANTHER LYSINE-SPECIFIC DEMETHYLASE 40 729 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Tan05g2760 966 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Tan05g2760 966 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Tan05g2760 966 MobiDBLite consensus disorder prediction 128 145 - -
Tan05g2760 966 MobiDBLite consensus disorder prediction 120 159 - -
Tan05g2760 966 MobiDBLite consensus disorder prediction 628 661 - -
Tan05g2760 966 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Tan05g2760 966 SMART fyrn_3 813 857 IPR003888 GO:0005634(InterPro)
Tan05g2760 966 Gene3D - 804 942 - -
Tan05g2760 966 Pfam jmjN domain 57 90 IPR003349 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2760 Tan-Chr5:79664890 Tan05g2762 Tan-Chr5:79664890 0.00E+00 dispersed
Tan05g2759 Tan-Chr5:79664890 Tan05g2760 Tan-Chr5:79664890 0.00E+00 tandem
Tan05g2760 Tan-Chr5:79664890 Tan05g2761 Tan-Chr5:79664890 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27613 PF02373 JmjC 2.80E-45 CL0029 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2760 K11446 - csv:101214856 1660.2