Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2762 ATGGACCAGAATAAATTGGGAGCAGATTCTCATGCAAAAGGGGATTATTCTTCCAAGGGTAGTCATAAAAGTAACCAGACTGTTGAGAAGTTAGGAAGTCCTCAGCATCAGAAGATTTCAGCTAGATGGCACCCGGAAGAAGCGTGCAGGCCTTTAATTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGATACATAGCTAAAATTCGTCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGTGTTCTCAAAGAGAAATGTATATGGGAAAATGCCAAGTTTTCTACTCGTATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGCCGAAAACGCAAGCGAAGGAAGCACTCAAAAGCAGGGACATCAGCTAGAAGCACCAATCTTGGTGTAGAAGCAAACGCTACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGATTTCACTCTCAAAGAATTCCAGGCACGTGCAGATAATTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATACCGAATCTAGCAAGAGAAGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTATAGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTGGCAGTGGCTTTCCCAAGGTCTCATCCATGGTTACTGAAGGAAATTCAGATCCGTATGTAAAGTCGGGTTGGAATCTTAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCCGGAGTTCTAGTTCCATGGCTCTATGTTGGAATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGATCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTGTGGTATGGAGTTCCTGGAAGCCACGCGCCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTTCTCAAATCTGAAGGAGTACCTGTGTATCGAGTAGTCCAGAATTCCAGGGAGTTCGTTCTTACCTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTAACTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAATTGTTATTTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTAGAAAAGAAAACTCCAAGTAATCAAAGATGGAAAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAGAGAGAGTGTTATGCCTGCTTTTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGATGACAGGTGTGTGCTCTTTCGCTACAGTATAAATGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAAAAGGACAATGAATCTGTAGCTAAGGTGAAGTTGGACAGCGGATTAATTGAAAAACCATCTTGGTCCCCAGAAATAATAGATAAGCTAAAAAGAACAGACGTCCCATGCAGTTCATCTAGTCACGCTTCTTCAGAAGTAGTGCAGTCAGAGTCTCACCGAGGATCGCTTAGTTTGAATACTTCCCACCTTAGTTCAGATAGTCAGAATGACATTGTAAACAGTGAAGTTATGGTAATAAATAAAGAAGAGAAGGTGGGGCAGGAGAGCTGCATTGATTTGAACCTTGAAATAATTTCTGATGAGAACGGTAGTTGTGGGCCTCACAAATCTGATGGCAAGATAATCATTGATTTGGAGGAAACGTACACTTCGTTGTTTGAAGAAAAAGACGTTTGTAAAGCAGCACGTGAATCAGATTTAATGGAACTCGACACTAATCATGTAAACACTTCTCCGGTTAATGGAACGATAGGTGTGAGAATGTGTGGATCTAATGGTAGTAAGTTGTTTGGAGTTGATCTTTCACAGTCGCAGTCAGCATTTCCATCTAACAATTCCTCAAAAGTAGAAACTCTAAAACACTTGGATAAAAGGATACCATCTTGGCCAAGTTCTCCTTGGAATTTGGTTCCTTCTGTTGAACCTATAAATATTGGAACAATTATGTTTGGAAAGCCTTGGCACTGCAAGAAGGCCATATTTCCAAAAGGTTTTAGAAGCCGAGTGAAATTCTTTAGTGTACTTAATCCAACTAGTATTGTTACCTACACATCAGAAGTTCTTGATGGTGGGCTCCTGGGACCTCTATTCAAGGTGGCATTGGAAGAATCTCCCAGTGTGAACTTCACTAATGCTTCAGCAACCAAATGCTGGGGCATGGTAGTACAGAGATTAAACCAAGAAATCGAAAGACAGAACCTTAGATTGGGAGGAACAGCTCCTTTGCAGCTTTTGGAGGAAGTTAATGGACTTGAAATGTTTGGATTTCTTTCACCTCACGTTATTCAGGCTATCGAGGCCCTTGATCCTAAACACCAGTGTATGGAGTATTGGAACCACCGGCATCATGGCTTACCCGAAAATTCAGGTGACAACACTAACTGCAAAAGTTCTGCTTTAAGATTGAATTTCTCTTCGGACGAAACAAGTGCAACTGCTTTTGATATCAATAGGGAAGAGGATGAGAATGTCAATCCAACTATAGGAATGGAAGGGCACCATCAAAATGAAGAGGTTCGGTCAGTTATAAAGGGACTGTTAAATAAAGCAAGTCCTGAAGAATTGAGCGTGCTGTGGAGCATATTCTGCACAGAACTGCAAACTACTGAATGGAGATCAGAATTTGCAGCAATGATCAAAGAGAAACAGGAAAAATGTAGATAG 3165 41.11 MDQNKLGADSHAKGDYSSKGSHKSNQTVEKLGSPQHQKISARWHPEEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPPSWNPPCVLKEKCIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKHSKAGTSARSTNLGVEANATSESDEKFGFNSGSDFTLKEFQARADNFKECYFGIKQAQEDLNFDTESSKRREPSVEDIEGEYWRIVEKSIDEVEVYYGADIESATFGSGFPKVSSMVTEGNSDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLTHGQNAVELYSAQRHRTSLSHDKLLFGSAREAAQALWELLVLEKKTPSNQRWKSVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKLQKMESEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCKMEKDNESVAKVKLDSGLIEKPSWSPEIIDKLKRTDVPCSSSSHASSEVVQSESHRGSLSLNTSHLSSDSQNDIVNSEVMVINKEEKVGQESCIDLNLEIISDENGSCGPHKSDGKIIIDLEETYTSLFEEKDVCKAARESDLMELDTNHVNTSPVNGTIGVRMCGSNGSKLFGVDLSQSQSAFPSNNSSKVETLKHLDKRIPSWPSSPWNLVPSVEPINIGTIMFGKPWHCKKAIFPKGFRSRVKFFSVLNPTSIVTYTSEVLDGGLLGPLFKVALEESPSVNFTNASATKCWGMVVQRLNQEIERQNLRLGGTAPLQLLEEVNGLEMFGFLSPHVIQAIEALDPKHQCMEYWNHRHHGLPENSGDNTNCKSSALRLNFSSDETSATAFDINREEDENVNPTIGMEGHHQNEEVRSVIKGLLNKASPEELSVLWSIFCTELQTTEWRSEFAAMIKEKQEKCR 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 79664890 79674144 - Tan0018211.4 Tan05g2762 754070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2762 1054 SMART JmjN_1 55 96 IPR003349 -
Tan05g2762 1054 SUPERFAMILY Clavaminate synthase-like 261 458 - -
Tan05g2762 1054 Pfam F/Y-rich N-terminus 806 857 IPR003888 GO:0005634(InterPro)
Tan05g2762 1054 Pfam jmjN domain 57 90 IPR003349 -
Tan05g2762 1054 Gene3D Cupin 41 414 - -
Tan05g2762 1054 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Tan05g2762 1054 ProSiteProfiles FYR domain FYRN motif profile. 799 857 IPR003888 GO:0005634(InterPro)
Tan05g2762 1054 SMART cupin_9 264 430 IPR003347 -
Tan05g2762 1054 SMART fyrc_3 863 955 IPR003889 GO:0005634(InterPro)
Tan05g2762 1054 Pfam F/Y rich C-terminus 861 950 IPR003889 GO:0005634(InterPro)
Tan05g2762 1054 MobiDBLite consensus disorder prediction 19 34 - -
Tan05g2762 1054 MobiDBLite consensus disorder prediction 1 42 - -
Tan05g2762 1054 ProSiteProfiles FYR domain FYRC motif profile. 859 949 IPR003889 GO:0005634(InterPro)
Tan05g2762 1054 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Tan05g2762 1054 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Tan05g2762 1054 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Tan05g2762 1054 PANTHER LYSINE-SPECIFIC DEMETHYLASE 40 781 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Tan05g2762 1054 MobiDBLite consensus disorder prediction 128 145 - -
Tan05g2762 1054 MobiDBLite consensus disorder prediction 120 159 - -
Tan05g2762 1054 MobiDBLite consensus disorder prediction 628 661 - -
Tan05g2762 1054 SMART fyrn_3 813 857 IPR003888 GO:0005634(InterPro)
Tan05g2762 1054 Gene3D - 804 942 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2762 K11446 - - csv:101214856 1803.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2759 Tan-Chr5:79664890 Tan05g2762 Tan-Chr5:79664890 0.00E+00 dispersed
Tan05g2760 Tan-Chr5:79664890 Tan05g2762 Tan-Chr5:79664890 0.00E+00 dispersed
Tan05g2762 Tan-Chr5:79664890 Tan08g1009 Tan-Chr8:16185124 9.70E-229 dispersed
Tan05g2761 Tan-Chr5:79664890 Tan05g2762 Tan-Chr5:79664890 0.00E+00 tandem
Tan05g2762 Tan-Chr5:79664890 Tan05g2763 Tan-Chr5:79664890 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1011 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan08g1009 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan08g1010 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan05g2759 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2762 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2763 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2760 . 28 948 JUMONJI Transcription Factor Family AT1G30810 51.2 3.4e-245 845.5
Tan05g2761 . 28 948 JUMONJI Transcription Factor Family AT1G30810 51.2 3.4e-245 845.5
Tan05g2760 . 64 948 JUMONJI Transcription Factor Family AT4G20400 51.5 3.5e-243 839.0
Tan05g2761 . 64 948 JUMONJI Transcription Factor Family AT4G20400 51.5 3.5e-243 839.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27615 PF02373 JmjC 3.20E-45 CL0029 Tan TR