Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2776 ATGAAAGAAAATGGAATAATAAGAAAACAAGGAGGAGCAGCACCATGCGCAGCATGCAAGCTACTGAGAAGAAGGTGTGCAGAAGAGTGTGTATTTGCACCTTATTTCCCCGCTGAGGAACCTCATAAGTTCGCCAACGTTCATAAAGTCTTCGGCGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGAGGAGATGCAGTGAGCAGTTTGGTATATGAAGCAAACGCTCGAGTGCGCGACCCGGTCTACGGGTGTGTCGGGGCCATATCGTCGCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTCTGGCTCAAGCCGAGGTGGTGCACCTGCGGGTACGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAGTGGATCACCCTCATCCAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGGGACTCAATGTGGTGA 513 51.46 MKENGIIRKQGGAAPCAACKLLRRRCAEECVFAPYFPAEEPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 79905354 79908245 + Tan0007003.1 Tan05g2776 754084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2776 170 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Tan05g2776 170 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Tan05g2776 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 135 - -
Tan05g2776 170 Coils Coil 94 121 - -
Tan05g2776 170 MobiDBLite consensus disorder prediction 129 152 - -
Tan05g2776 170 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0063 Tan-Chr2:823586 Tan05g2776 Tan-Chr5:79905354 1.20E-45 dispersed
Tan04g0361 Tan-Chr4:3031219 Tan05g2776 Tan-Chr5:79905354 1.90E-29 dispersed
Tan05g0519 Tan-Chr5:3585649 Tan05g2776 Tan-Chr5:79905354 2.80E-42 dispersed
Tan05g0917 Tan-Chr5:7378777 Tan05g2776 Tan-Chr5:79905354 9.80E-17 dispersed
Tan05g2776 Tan-Chr5:79905354 Tan11g0319 Tan-Chr11:2505729 3.30E-38 dispersed
Tan05g2776 Tan-Chr5:79905354 Tan05g0608 Tan-Chr5:4443176 1.10E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27617 PF03195 LOB 2.60E-43 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2776 - - - 0.0