Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g2776 | ATGAAAGAAAATGGAATAATAAGAAAACAAGGAGGAGCAGCACCATGCGCAGCATGCAAGCTACTGAGAAGAAGGTGTGCAGAAGAGTGTGTATTTGCACCTTATTTCCCCGCTGAGGAACCTCATAAGTTCGCCAACGTTCATAAAGTCTTCGGCGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGAGGAGATGCAGTGAGCAGTTTGGTATATGAAGCAAACGCTCGAGTGCGCGACCCGGTCTACGGGTGTGTCGGGGCCATATCGTCGCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTCTGGCTCAAGCCGAGGTGGTGCACCTGCGGGTACGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAGTGGATCACCCTCATCCAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGGGACTCAATGTGGTGA | 513 | 51.46 | MKENGIIRKQGGAAPCAACKLLRRRCAEECVFAPYFPAEEPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 79905354 | 79908245 | + | Tan0007003.1 | Tan05g2776 | 754084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g2776 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
Tan05g2776 | 170 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
Tan05g2776 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 14 | 135 | - | - | |
Tan05g2776 | 170 | Coils | Coil | 94 | 121 | - | - | |
Tan05g2776 | 170 | MobiDBLite | consensus disorder prediction | 129 | 152 | - | - | |
Tan05g2776 | 170 | MobiDBLite | consensus disorder prediction | 129 | 150 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g0063 | Tan-Chr2:823586 | Tan05g2776 | Tan-Chr5:79905354 | 1.20E-45 | dispersed | |
Tan04g0361 | Tan-Chr4:3031219 | Tan05g2776 | Tan-Chr5:79905354 | 1.90E-29 | dispersed | |
Tan05g0519 | Tan-Chr5:3585649 | Tan05g2776 | Tan-Chr5:79905354 | 2.80E-42 | dispersed | |
Tan05g0917 | Tan-Chr5:7378777 | Tan05g2776 | Tan-Chr5:79905354 | 9.80E-17 | dispersed | |
Tan05g2776 | Tan-Chr5:79905354 | Tan11g0319 | Tan-Chr11:2505729 | 3.30E-38 | dispersed | |
Tan05g2776 | Tan-Chr5:79905354 | Tan05g0608 | Tan-Chr5:4443176 | 1.10E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27617 | PF03195 | LOB | 2.60E-43 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g2776 | - | - | - | 0.0 |