Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2886 ATGGCACCGCCAGCAGTCTTTCTTTTTCTCCTCTCCATCTCCCTCCTCTCTGCCGCCATCTCCGCCGCCCCCGCCGCCGTGCAGAACCCCGAACTCGTCGTACAAGAAGTACACAGAAGCATTATCAACGCAACGAAGAGGAGGAATTTGGGGTATCTTTCATGCGGGACTGGGAATCCGATCGACGATTGCTGGCGTTGCGATTCCAATTGGGAGAAGAATCGCCAGAGATTAGCCGACTGTGGAATTGGGTTTGGTAAAAACGCCATTGGCGGCCGAGATGGGCAAATCTACGTCGTCACCGACGCTGGCGACGACGATCCCGTCAACCCCAAACCGGGAACTCTCCGGTACGCGGTAATCCAAGACGAACCCCTCTGGATCATCTTCGCTCGTGACATGGTTATCCGACTGAAAGAGGAACTGATCATGAACTCCTTCAAGACCATTGACGGCCGTGGCGCCAGCGTCCACATCGCCGGCGGACCCTGCATTACGATTCAGTACGTGACGAACATCATAATCCATGGGCTGAACATTCACGACTGCAAGCAAGGGGGAAACACGGACGTGAGAGATTCCCCCCGACATTTCGGGTTCAGAACCATATCGGACGGCGACGGCGTTTCGATCTTCGGCGGAAGCCATATCTGGGTGGATCACTGCTCATTGTCGAACTGTAACGATGGATTAATCGACGCCATTCATGGGTCCACGGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGCTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAACATGCAGGTCACCATTGCTTTCAACCACTTTGGCGAAGGCCTTGTTCAAAGAATGCCCAGATGCAGGCATGGGTATTTTCATGTGGTGAACAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCAGCCCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCAAATGACAGATTCAGCAAAGAGGTAAAATAA 1011 51.83 MAPPAVFLFLLSISLLSAAISAAPAAVQNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81256955 81259028 - Tan0006837.2 Tan05g2886 754194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2886 336 PANTHER PECTATE LYASE 18-RELATED 19 335 IPR045032 GO:0030570(InterPro)
Tan05g2886 336 Gene3D - 58 336 IPR012334 -
Tan05g2886 336 SUPERFAMILY Pectin lyase-like 33 333 IPR011050 -
Tan05g2886 336 Pfam Pectate lyase 143 324 IPR002022 -
Tan05g2886 336 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Tan05g2886 336 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Tan05g2886 336 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Tan05g2886 336 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Tan05g2886 336 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Tan05g2886 336 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Tan05g2886 336 SMART amb_all 133 330 IPR002022 -
Tan05g2886 336 FunFam Pectate lyase 58 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2886 Tan-Chr5:81256955 Tan11g0685 Tan-Chr11:5943029 2.80E-161 dispersed
Tan05g2885 Tan-Chr5:81256955 Tan05g2886 Tan-Chr5:81256955 6.20E-200 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2886 K01728 - csv:101209736 662.144