Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2897 ATGGCAGCCACAGCCCTGGCCGCGGAGCCGACGCAAGAGGTACTTTCCTGGCTTAAAACCCTACCTTTGGCTCCTGAATATCACCCCACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCGAAGTTTGGAATCTGCAAAATTGTGCCGCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAAGTCGCTTGCAGCTCGTGCGCCCTGTTCTGACTCGAGTAATTCCAAGTCTCCGCCTACATTCACCACTCGCCAACAACAGATCGGGTTTTGCCCGCGAAAAACACGCCCGGTTCAGAAATCAGTGTGGCAGAGCGGCGAGTACTACACATTTCAGCAATTTGAGGCTAAGGCCAAGGCCTTCGAGAAGAGTTATTTGAAGAAATATGCGAAGAAAGGGGCGCTTTCGCCTTTGGAAATCGAGACGCTCTATTGGAGGGCTACTCTGGACAAGCCGTTTTCGGTGGAATATGCGAACGATATGCCTGGTTCTGCGTTTGTGCCTGTAAATGCAAAAATGTTTAGGGAGGCAGGGGAAGGGACGACGCTTGGTGAGACTGCGTGGAACATGAGGGGAGTGTCTAGGGCGAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTATGTTGCTATGATGTTTAGCTGGTTTGCTTGGCATGTTGAAGACCATGATTTGCATAGCTTAAATTACCTGCATATGGGGGCGGGAAAAACATGGTATGGCGTGCCAAGAGATGCTGCTGTGGCATTTGAGGAGGTTGTTAGGGTTCAGGGATATGGAGGAGAAATCAATCCCCTTGTTACTTTTGCTGTTCTTGGTGAGAAGACCACCGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGCGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCAATGGTCTCTCATTTTCAGTTGCTATATGATCTTGCTCTAAGTTCCAGAGCACCTCTGTGCACTGGTGCTGAACCAAGAAGTTCACGACTAAAAGATAAAAGAAGGGGTGAAGGGGAAACAGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTACTGGACACTCTAGGAAGGGGAGCTTCAGTTGTACTTCTTCCCCAAGGTTCTTCAGATTCCATTTATTCAAGACTGCGCGTTGGATCCCACTTGAGAGCAAAACCTAGATTTCCTGCTGGTTTTTGCAATTCTAAGGAAGAAGCCAAATCTCCTCAAAGTTTTGATTATGATAATCTCACACTAGAAAACAGCCAGGGAATGAATCGAGTTAAAGGTTTCTATTCAGCTAACGGACTATATTCTACTCTATCTGAGAGAAGCACGGGTAATTTATGTGCTTCAAGTTCAAGGACTTTGAATACCAACAAGGAACGAGGAGGTAGTGTTCATTACGATGGATTATCAGACCAAAGACTGTTTTCTTGTGTCACATGTGGCATTTTAAGCTTTGCCTGTGTGGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGGATAACCAGTGAAGGGATTGCTATTCGAGATGGGCATGCTGTTACTTCTCAGCTGATGAGTAATAGTGGAAAAAGAGAAAAGTGTGTCTCTGATGGTTTGTATGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTCCAGAAGTGGATCAAAGTTATGAAGCCAATTTAAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGCATGCTCGCATTGACTTATGGACATTCTTCTGATTCCGAGGAGGATGATGCTAAACTAATGATTTGTTCTTCAGAAGACCAATATCAGTTCGAGAAGTCTGGTCTTACTTCTAGTGAATATTGTAAAAACAGTGCAACTTCGAATCATGATTCCTTGTCATTTGGTGTTAACACTGCAGATCAAATGCACTTTCAAGTCAATCACTATGAAGAATTTGGACGATCTAGATTTGATTCCAAAGACTCATTCAATGGTTCTTCTGAGATTGAAATTGATGGCATAGGTTCAACTAAGAAAAATGGCTTGTCAACTAGATATGATTCACATGTGAATGGAAAATCCTCCTTAGATTCTGATTCTGAAAAACCAATGTTTGACAAGTCCACTGAATCAGTGGAGATTGAGAATATGCCATTTTCTCCAGATATTGATGAAGACTCCTCGAGGTTGCATGTATTCTGTCTGGAACATGCAAAAGAAGTGGAACAACAACTTTGCCCAATTGGAGGAGTGCATATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAATTGGTGGCACAAGAATTAGGTATGGACCATCTGTGGACTGATACGATGTTCAGAGGTGCCACACAAGATGAAGAAAAGAGAATTCAGTTAGCTTTAGATAGCGAGGATGCAATTCCGGGTAATGGAGATTGGGCTGTTAAGTTGGGAATTAATCTCTTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAAATGGCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCCGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGGACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGTGGAAAAGTTTGGATGTCAAATCAAGTTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCCCTTCTTGGACTATGTCAGATGAGAAGATTGATAAGAAATCGGAAAATATCCAGAAAAATGAGACTGTTGCGGTGAATAGAAAATCTGCCGGCAAGAGAAAAATGACTTATGGGAGCGGGACAACTAAGAAAGCCAAACCTATAGAGTCAGAAGACATGGTTTCAGATGATTCGGGTGAAGATTGTATTCATCAGCATCATAGGATTCTACAAAACAAGCGTTCTAAATTTGTTGAAAGCAATGATGCTATGTCGGATGATTCTGTGGAGGATGATTCTTATAAAAAACATGGAGTTCCCGTAAGTGAGGGAGCTTATTGTGAGACAGATGACACTGGTTCAGATGATTCTCACGGAGATCATCATAATCAGCTGCACAGAGGGTTCTGTGGATTCAAGCTGCCCAAATGGGGTGAGATAGAACCTGCAGTTTCTGATGATTCCTTAGAGCGCAGTTCTTCTCAGCATCGTGGGAAAAAGAGTAAAAGCAAGATAGAAAAATATATTGAGAGACAAGATGCACTTTCGGATGAGTGTTTGGAGAGTCCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGTCCTTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAGGACTTCTAGAAGCAAGATGACCACTATTGAGAGTGAAGATGCAGTTTCCGAGGATTCCCTTGAAAATAATTCTCATCAGCATAGAAGTATGCCTCGAAGCAAACCAGCCAAACGCACTGCGAGGGAAAATGTATTTTCAGATGATCCAGATGAAGATGATAATTCTCTTCTGCACCATAGGAAAATTATAAGAAACGTGCAATCCAAATACATTGAGAGAGAAAATACATCAGATGACCAACTTGATGATAGCACTAATCAGTGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTTAAGACAGAGACCATTTCTCAAATGAAACAAGAGATTCTGCGACCTGCAAAGCGGGGAGCCTCTCAGACTTTGAAAGAGGAATTCTCTCAACCTCTAAAACGTGGAGGCCGCCGTTCCTTAAAATTAGAGACCCCTCAGCCAACAACAAAACAACATGCCACAAATCGGCGCGGTAAGCAAGCTAAGAGGAATAGTAAATTGACTGATTTAGAATCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACTCCAAAGCCTACTAAACTTTCAGAAGCGAAACTGAAAGATAAAAAACCAGTTGGTAAGAAAAAGGTGAAGAATGCTTCATCTTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGATGAGGAATCAGAATATCTTTGTGATATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGTCTTGCACAAACGAAACATTTGCCCTGTCAAGGGGTGTGGAAAGAAGTTTTTCTCACACAAGTACCTTGTGCAGCATCGTCGAGTACACATGGATGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGGGTTCATACAGGCGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTGTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGGTAGAGGTTAA 4644 42.68 MAATALAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSDSSNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKAFEKSYLKKYAKKGALSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVNAKMFREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALSSRAPLCTGAEPRSSRLKDKRRGEGETVIKELFVQNIVENNSLLDTLGRGASVVLLPQGSSDSIYSRLRVGSHLRAKPRFPAGFCNSKEEAKSPQSFDYDNLTLENSQGMNRVKGFYSANGLYSTLSERSTGNLCASSSRTLNTNKERGGSVHYDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGITSEGIAIRDGHAVTSQLMSNSGKREKCVSDGLYDVPVQAVNRQLPEVDQSYEANLNTEKRNETSALGMLALTYGHSSDSEEDDAKLMICSSEDQYQFEKSGLTSSEYCKNSATSNHDSLSFGVNTADQMHFQVNHYEEFGRSRFDSKDSFNGSSEIEIDGIGSTKKNGLSTRYDSHVNGKSSLDSDSEKPMFDKSTESVEIENMPFSPDIDEDSSRLHVFCLEHAKEVEQQLCPIGGVHILLLCHPDYPKMEAEAKLVAQELGMDHLWTDTMFRGATQDEEKRIQLALDSEDAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMAYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFPSWTMSDEKIDKKSENIQKNETVAVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDDSGEDCIHQHHRILQNKRSKFVESNDAMSDDSVEDDSYKKHGVPVSEGAYCETDDTGSDDSHGDHHNQLHRGFCGFKLPKWGEIEPAVSDDSLERSSSQHRGKKSKSKIEKYIERQDALSDECLESPLKQYRRIPRSKQTKVLKKNVLSHDIRDDSFLWHHQRTSRSKMTTIESEDAVSEDSLENNSHQHRSMPRSKPAKRTARENVFSDDPDEDDNSLLHHRKIIRNVQSKYIERENTSDDQLDDSTNQCRRRVLRSKPVKTETISQMKQEILRPAKRGASQTLKEEFSQPLKRGGRRSLKLETPQPTTKQHATNRRGKQAKRNSKLTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKLKDKKPVGKKKVKNASSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81326147 81334062 + Tan0020026.1 Tan05g2897 754205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2897 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1502 1536 IPR036236 -
Tan05g2897 1547 Gene3D Cupin 17 368 - -
Tan05g2897 1547 SUPERFAMILY Clavaminate synthase-like 209 376 - -
Tan05g2897 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1470 1512 IPR036236 -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1273 1296 - -
Tan05g2897 1547 SMART cupin_9 195 364 IPR003347 -
Tan05g2897 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1456 1478 IPR013087 -
Tan05g2897 1547 FunFam Probable lysine-specific demethylase ELF6 1511 1540 - -
Tan05g2897 1547 Pfam jmjN domain 25 58 IPR003349 -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1201 1258 - -
Tan05g2897 1547 FunFam Probable lysine-specific demethylase ELF6 1481 1510 - -
Tan05g2897 1547 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1008 1038 - -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1125 1145 - -
Tan05g2897 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1516 1540 IPR013087 -
Tan05g2897 1547 Gene3D Classic Zinc Finger 1453 1538 - -
Tan05g2897 1547 ProSiteProfiles JmjC domain profile. 198 364 IPR003347 -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 758 781 - -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1201 1227 - -
Tan05g2897 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1484 1513 IPR013087 -
Tan05g2897 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1514 1545 IPR013087 -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1386 1400 - -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 79 98 - -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1273 1426 - -
Tan05g2897 1547 SMART c2h2final6 1514 1540 IPR013087 -
Tan05g2897 1547 SMART c2h2final6 1431 1453 IPR013087 -
Tan05g2897 1547 SMART c2h2final6 1454 1478 IPR013087 -
Tan05g2897 1547 SMART c2h2final6 1484 1508 IPR013087 -
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1359 1378 - -
Tan05g2897 1547 Pfam JmjC domain, hydroxylase 229 346 IPR003347 -
Tan05g2897 1547 SMART JmjN_1 23 64 IPR003349 -
Tan05g2897 1547 FunFam Probable lysine-specific demethylase ELF6 17 368 - -
Tan05g2897 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1486 1508 IPR013087 -
Tan05g2897 1547 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1333 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Tan05g2897 1547 MobiDBLite consensus disorder prediction 1234 1258 - -
Tan05g2897 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1454 1483 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2897 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2897 Tan-Chr5:81326147 Tan11g0890 Tan-Chr11:7213613 9.20E-10 dispersed
Tan05g2897 Tan-Chr5:81326147 Tan01g2218 Tan-Chr1:26380952 3.80E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27623 PF02373 JmjC 1.20E-36 CL0029 Tan TF