Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g2899 ATGGCATCGCAGGACAAGGGTCGTCCACTACCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCAGAAGGATTCACGGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTTGCACCACAAAGAAATGAATCTGTCTATAACAATGAAGGTTACCGTCAGTATCCTCCACCGAAGAAGAGGTGGTTTTGCTGTGGTTAA 231 44.16 MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAANMVAPQRNESVYNNEGYRQYPPPKKRWFCCG 76
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 81340624 81342733 - Tan0018422.1 Tan05g2899 754207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g2899 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 4 74 IPR040387 GO:0005886(PANTHER)
Tan05g2899 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g2899 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0118 Tan-Chr4:766576 Tan05g2899 Tan-Chr5:81340624 1.20E-11 dispersed
Tan04g0119 Tan-Chr4:766576 Tan05g2899 Tan-Chr5:81340624 1.00E-10 dispersed
Tan05g0990 Tan-Chr5:8275261 Tan05g2899 Tan-Chr5:81340624 6.00E-14 dispersed
Tan05g2899 Tan-Chr5:81340624 Tan07g1444 Tan-Chr7:65509992 3.10E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g894 . . . . . . Bma06g00243 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0050 . . . . . . . . . . . Bpe15g00666 . . Sed08g2464 . . . . . Car18g00203 . . Bhi08g01696 Tan05g2899 Cmetu12g2048 Lac10g0538 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141